Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,419,386 – 1,419,506 |
Length | 120 |
Max. P | 0.994159 |
Location | 1,419,386 – 1,419,506 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.75 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -27.72 |
Energy contribution | -27.92 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.99 |
Structure conservation index | 0.93 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994159 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1419386 120 - 20766785 AUCGACAUGGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUCCAUUUUA .((((..((..((((((.(....).))))))..)).))))..((.(((.((..((((((((((..(((.......)))...))))(((........)))....)))))).)).))).)). ( -26.50) >DroSec_CAF1 37844 120 - 1 AUCGACAUGGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA .((((..((..((((((.(....).))))))..)).))))(((((.(((..((......))..))).((((((((....((((((.........)).)))).....))))))))))))). ( -29.40) >DroSim_CAF1 42897 120 - 1 AUCGACAUGGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA .((((..((..((((((.(....).))))))..)).))))(((((.(((..((......))..))).((((((((....((((((.........)).)))).....))))))))))))). ( -29.40) >DroEre_CAF1 36348 119 - 1 AUCGACAU-GGCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA .((((...-.(((((((.(....).)))))))....))))(((((.(((..((......))..))).((((((((....((((((.........)).)))).....))))))))))))). ( -32.60) >DroYak_CAF1 37140 120 - 1 AUCGACGUUGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUGGUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA .((((...(((.(((((.(....).))))))))...))))(((((.(((..((......))..))).((((((((.((.((((((.........)).))))..)).))))))))))))). ( -31.60) >consensus AUCGACAUGGCCAGCGCCCGAAAGCGUGCUGCACAAUCGAAAAAUAUGUAAGCAAAAUGGCGCACAAGAAAUAAACUUAUGGCGCACUUCCGCAGCAGUCAAACAUUUUAUUUCAUUUUA .((((....(.((((((.(....).)))))))....))))(((((.(((..((......))..))).((((((((....((((((.........)).)))).....))))))))))))). (-27.72 = -27.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:12 2006