| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,754,435 – 5,754,528 |
| Length | 93 |
| Max. P | 0.603128 |
| Location | 5,754,435 – 5,754,528 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 82.78 |
| Mean single sequence MFE | -19.91 |
| Consensus MFE | -14.26 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5754435 93 + 20766785 GCCAGCUGAUUCCCCAUUCUUGAUUCCUAAC-------UCCCAACUGGAAA-CGCCAGAUUCACGACUCCCACUGGAGCCAAUUAAUACAUGUCAGC-AUUU ....((((((.........(((.........-------......((((...-..))))........((((....)))).))).........))))))-.... ( -17.97) >DroSec_CAF1 44874 93 + 1 GCCAGCUGAUUCCCCAUUCUUGAUUUCUAAC-------UCCCAACUGGAGA-CGCCGGAUUCACGACUCCCACUGGAGCCAAUUAAUACAUGUCAGC-AUUU ....((((((.......((.(((.(((...(-------(((.....)))).-....))).))).))((((....)))).............))))))-.... ( -19.70) >DroSim_CAF1 45813 93 + 1 GCCAGCUGAUUCCCCAUUCUUGAUUCCUAAC-------UCCCAACUGGUGA-CGCCAGAUUCACGACUCCCACUGGAGCCAAUUAAUACAUGUCAGC-AUUU ....((((((.........(((.........-------......((((...-..))))........((((....)))).))).........))))))-.... ( -18.87) >DroEre_CAF1 45005 101 + 1 GCCAGCUGAUUCCUGUUUUCUGAUUCCCAACUCCCAACUCCCAACUGGAGAGCCCCAGAUUCGCGACUCCCACUGGAGCCAAUUAAUACAUGUCAGC-AUUU ....((((((...(((....(((((............((((.....)))).((.((((..............)))).)).)))))..))).))))))-.... ( -20.54) >DroYak_CAF1 45083 93 + 1 GCCAGCUGAUUCCUGUUUUCUGAUUCCUAAC-------UCCCAACUGGAGA-CCCCAGAUUCACGACUCCCACUGGAGCCAAUUAAUACAUGUCAGC-AUUU ....((((((...(((....(((((......-------......((((...-..))))......(.((((....)))).))))))..))).))))))-.... ( -19.70) >DroAna_CAF1 45675 80 + 1 GCCAGCUGAUUCUAGGAUUCUCGU-CCU--------------------AGA-AUCGAGAAUCGCGACUCCCACUGGAGCCAAUUAAUACAUGUCAGCCAGUU ....((((((.....((((((((.-...--------------------...-..))))))))..(.((((....)))).)...........))))))..... ( -22.70) >consensus GCCAGCUGAUUCCCCAUUCCUGAUUCCUAAC_______UCCCAACUGGAGA_CGCCAGAUUCACGACUCCCACUGGAGCCAAUUAAUACAUGUCAGC_AUUU ....((((((..................................((((......))))......(.((((....)))).)...........))))))..... (-14.26 = -14.82 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:41 2006