Locus 1517

Sequence ID 2R_DroMel_CAF1
Location 5,747,574 – 5,747,671
Length 97
Max. P 0.794785
window2565

overview

Window 5

Location 5,747,574 – 5,747,671
Length 97
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 77.58
Mean single sequence MFE -19.53
Consensus MFE -10.33
Energy contribution -9.58
Covariance contribution -0.75
Combinations/Pair 1.17
Mean z-score -2.01
Structure conservation index 0.53
SVM decision value 0.60
SVM RNA-class probability 0.794785
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5747574 97 - 20766785
AUG-CGGCGCAGAAUAAAUCUAACAUGAUUUAAGCAACGGAAAAACAUGAAAUAUUAAUGCCGAUGCUUG----AGUCUUGGCUCCGAAUCAGAAUCCGAAU
...-(((.(((((.....)))..((.((((((((((.(((.....(((.........)))))).))))))----)))).)))).)))............... ( -24.00)
>DroPse_CAF1 38278 87 - 1
AAC-CAGCACAAAAUAAAUCUAACAUGAUUUAAGCAACGGAAAAACAUGAAAUAUUAAUGCUGAUGGCUGCCCCAGCCCCGGCCCCGU--------------
...-..........((((((......))))))....((((.......(((....)))..((((..(((((...))))).)))).))))-------------- ( -16.60)
>DroSec_CAF1 38070 97 - 1
AAG-CGGCGCAGAAUAAAUCUAACAUGAUUUAAGCAACGGAAAAACAUGAAAUAUUAAUGCCGAUGCUUG----AGUCUUGGCUCCGAAUCAGAAUCCGAAU
...-(((.(((((.....)))..((.((((((((((.(((.....(((.........)))))).))))))----)))).)))).)))............... ( -24.00)
>DroSim_CAF1 38870 97 - 1
AAG-CGGCGCAGAAUAAAUCUAACAUGAUUUAAGCAACGGAAAAACAUGAAAUAUUAAUGCCGAUGCUUG----AGUCUUGGCUCCGAAUCAGAAUCCGAAU
...-(((.(((((.....)))..((.((((((((((.(((.....(((.........)))))).))))))----)))).)))).)))............... ( -24.00)
>DroAna_CAF1 38711 75 - 1
AAACCAGCACAAAAUAAAUCUAACAUGAUUUAAGCAACGGAAAAGCAUGAAAUAUUAAUGCUGAUGGUUG----ACUCU-----------------------
.(((((.(......((((((......))))))...........(((((.........)))))).))))).----.....----------------------- ( -13.00)
>DroPer_CAF1 38425 87 - 1
AAC-CAGCACAAAAUAAAUCUAACAUGAUUUAAGCAACGGAAAAACAUGAAAUAUUAAUGCUGAUGGCUGCCCCAGCCCCGGCCCCAG--------------
...-(((((.....((((((......))))))......(......)............)))))..(((((...)))))..........-------------- ( -15.60)
>consensus
AAG_CAGCACAAAAUAAAUCUAACAUGAUUUAAGCAACGGAAAAACAUGAAAUAUUAAUGCCGAUGCUUG____AGUCUUGGCUCCGA______________
....(((((.....((((((......))))))......(......)............)))))....................................... (-10.33 =  -9.58 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:39 2006