Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,746,571 – 5,746,671 |
Length | 100 |
Max. P | 0.982928 |
Location | 5,746,571 – 5,746,671 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 73.10 |
Mean single sequence MFE | -29.75 |
Consensus MFE | -16.02 |
Energy contribution | -16.55 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.12 |
Mean z-score | -2.25 |
Structure conservation index | 0.54 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.982928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5746571 100 + 20766785 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGCCACAACACGAAGGAAAAC--GAGCA---C-------------AGUCGAACGAACGUUUG--UUGCGCA ......(((.((.(((...((((.....))))..((((......))))..)))))))).(....).....--..((.---(-------------((.(((((....)))))--))).)). ( -25.10) >DroPse_CAF1 37583 87 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCGGGA-AAACUGGAAGCG--GACACGAGUCGAUAC--GCA--------------------CUCGG------CAUUG--CUGCGCA ..............((((((((((.(((((....((((..-...)))).....--(((....))).....--)))--------------------)).))------)))))--.)))... ( -29.80) >DroEre_CAF1 37153 96 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGCCACAACACGAAGGAAAAC--GAGCA---C-------------AGUCGA----GCGUUUG--UUGCGCA .............(((.....)))..((((....((((......))))...........(....).....--..)))---)-------------......----((((...--..)))). ( -23.00) >DroWil_CAF1 137212 104 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGUGGAAAUGGAAGUGGAAAUGCGAGUA---A---------CGAAAUGCGC----GCCUUUACAGUGCGCA ......((((.(..((((....(((..(.(((..((((......))))..))).)..)))........)))).).))---)---------)....(((((----((.......))))))) ( -29.50) >DroAna_CAF1 38045 110 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGCCC--GCCCGAGUGCUAAC--GAGUGCCACAACGAGGCAUGAGACUCGG----GGCAUUG--UUGCGCA ....(((((....(((.....)))..........((((......)))).)))))--.(((((((.((...--..(((((.......))))).))))))))----)(((...--.)))... ( -41.30) >DroPer_CAF1 37672 87 + 1 AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCGGGA-AAACUGGAAGCG--GACACGAGUCGAUAC--GCA--------------------CUCGG------CAUUG--CUGCGCA ..............((((((((((.(((((....((((..-...)))).....--(((....))).....--)))--------------------)).))------)))))--.)))... ( -29.80) >consensus AAUAGGGUUAGUAGGCAUAAUGCCAAGUGCAUAGCCAGGAAAAACUGGAAGCC__AACACGAGUGGAAAC__GAG_A___C_____________ACUCGG____GCCAUUG__UUGCGCA .............(((.....)))..(((((...((((......))))...........((((................................))))...............))))). (-16.02 = -16.55 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:38 2006