| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,735,719 – 5,735,825 |
| Length | 106 |
| Max. P | 0.701017 |
| Location | 5,735,719 – 5,735,825 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 82.27 |
| Mean single sequence MFE | -27.77 |
| Consensus MFE | -20.83 |
| Energy contribution | -20.87 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.701017 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5735719 106 + 20766785 ACCUCAGCUUGAACACUUUGAUGUACAAAAUGGUUUGGCCAGUUAUGUAAAUAC-UUUUGCUACGCACUGUCAGCCAUGGCCAAAUCAUGGCAUUCAGCAUAU-UGCA ......(((((.(((......))).))).((((((((((((((...(((((...-.))))).))((.......))..)))))))))))).)).....((....-.)). ( -26.30) >DroVir_CAF1 43869 102 + 1 ----UUAUUUAAACACUUUGAUGUAUAAAAUGGUUUGGCCCGUUAUAUAAAUGC-UUUUGCUGCGCGUUGUUAGCCAUGGCCAAUGCAUGGCAUUCAGCAUAU-UGUU ----.......((((......(((((((...((.....))..))))))).((((-(..((((..((((((...((....))))))))..))))...)))))..-)))) ( -25.90) >DroPse_CAF1 27489 106 + 1 UCGUCAGUUUGAACACCUUGAUGUACAGAAUGGCUUGGCCAGUCAUGUGAAUAC-UUUUGCUACGCACUUUCAGCCAGGGCCAGGUCCUGGCACUCAGCAUAU-UGCU ..(((((((((.(((......))).))))..(((((((((.((...(..((...-.))..).))((.......))...))))))))))))))....(((....-.))) ( -28.90) >DroGri_CAF1 42785 102 + 1 ----UUAUUUAAACACUUUGAUGUAUAAAAUGGUUUGGCCCGUUAUAUAAAUGC-UUUUGCUACGCGUUGUUAGCCAUGGCCAAUGCAUGGCAUUCAGCAUAU-UGUU ----.......((((......(((((((...((.....))..))))))).((((-(..(((((.((((((...((....)))))))).)))))...)))))..-)))) ( -26.60) >DroYak_CAF1 26167 106 + 1 CCCCCAGCCUGAACACUUUAAUGUACAAAAUGGUUUGGCCAGUUAUGUAAAUAC-UUUUGCUACGCACUGUCAGCCAUGGCCAAAUCAUGGCAUUUAGCAUAU-UGCU ......(((((.(((......))).))..((((((((((((((...(((((...-.))))).))((.......))..)))))))))))))))....(((....-.))) ( -28.60) >DroPer_CAF1 27628 108 + 1 UCGUCAGUUUGAACACCUUGAUGUACAGAAUGGCUUGGCCAGUCAUGUGAAUACCUUUUGCUACGCACUUUCAGCCAGGGCCAGGUCCUGGCACUCAGCAUAUUUGCU ..(((((((((.(((......))).))))..(((((((((.((...(..((.....))..).))((.......))...))))))))))))))....((((....)))) ( -30.30) >consensus _C_UCAGUUUGAACACUUUGAUGUACAAAAUGGUUUGGCCAGUUAUGUAAAUAC_UUUUGCUACGCACUGUCAGCCAUGGCCAAAUCAUGGCAUUCAGCAUAU_UGCU ..................((((((.....(((((((((((.((...(((((.....))))).))((.......))...))))))))))).))).)))(((....))). (-20.83 = -20.87 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:37 2006