Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,731,720 – 5,731,822 |
Length | 102 |
Max. P | 0.831381 |
Location | 5,731,720 – 5,731,822 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -36.32 |
Consensus MFE | -31.78 |
Energy contribution | -31.62 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.40 |
Structure conservation index | 0.88 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.831381 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5731720 102 + 20766785 UGAUUGUGGAUGUAGCUAGGGCACGCAUAUGUGUGCUUUGGCGCUUCUCGCACAGACACACUGAAACGAACUACUCAUGCACAGUGGUGUGUGCAGCGGGGU ....((((..(((.((((((((((((....))))))))))))((.....)))))..))))............((((.((((((......))))))...)))) ( -39.50) >DroSec_CAF1 22236 101 + 1 UGAUUGUGGAUGUAGCUAU-GCACGCAUGUGUGUGCUUUGGCGCUUCUCGCACAGACACACUGAAACGAACUACUCAUGCACAGUGGUGUGUGCAGCGGGGU ....((((..(((.((((.-((((((....))))))..))))((.....)))))..))))............((((.((((((......))))))...)))) ( -34.30) >DroSim_CAF1 21406 101 + 1 UGAUUGUGGAUGUAGCUAU-GCACGCAUGUGUGUGCUUUGGCGCUUCUCGCACAGACACACUGAAACGAACUACUCAUGCACAGUGGUGUGUGCAGCGGGGU ....((((..(((.((((.-((((((....))))))..))))((.....)))))..))))............((((.((((((......))))))...)))) ( -34.30) >DroEre_CAF1 22301 100 + 1 UGAUUGUGGAUGU-GCUAU-GCACGCAUGUGUGUGCUUUGGCGCUUCGCGCACAGACACUCAGAAACGAACUACUCAUGCACAGGGGCGUGUGUAGCGGGGC ..........(.(-(((((-((((((.((((((((.((((((((...)))).)))))))........((.....))..)))))...)))))))))))).).. ( -36.60) >DroYak_CAF1 22219 101 + 1 UGAUUGUGGAUGUAGCUAU-GCACGCAUGUGUGUGCUUUGGCGCUUCGCGCACAGACACACAGAAGCGAACUACUCAUGCACAGGGGCGUGUGCAGCAGGGC ..............(((.(-((.(((.(.((((((.((((((((...)))).)))))))))).).))).........((((((......))))))))).))) ( -36.90) >consensus UGAUUGUGGAUGUAGCUAU_GCACGCAUGUGUGUGCUUUGGCGCUUCUCGCACAGACACACUGAAACGAACUACUCAUGCACAGUGGUGUGUGCAGCGGGGU .....(((..(((.((((..((((((....))))))..))))((.....)))))..)))..............(((.((((((......))))))...))). (-31.78 = -31.62 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:34 2006