Locus 1511

Sequence ID 2R_DroMel_CAF1
Location 5,728,151 – 5,728,243
Length 92
Max. P 0.820010
window2556

overview

Window 6

Location 5,728,151 – 5,728,243
Length 92
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 77.40
Mean single sequence MFE -32.52
Consensus MFE -14.62
Energy contribution -15.42
Covariance contribution 0.80
Combinations/Pair 1.27
Mean z-score -2.07
Structure conservation index 0.45
SVM decision value 0.68
SVM RNA-class probability 0.820010
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5728151 92 + 20766785
AAGCAGA------UGGAAAUCCCGUGCGAGCGAGCGAGACAGACGAGCGAGGGAGGGAGGGAGAGGGCAAUUGUGCUCUAUCCGCCCUGUUGGCUGUA
..((.((------(....))).(((....))).))...((((.(.(((.((((..(((...((((.((....)).)))).))).))))))).))))). ( -32.90)
>DroSec_CAF1 18513 88 + 1
AAGCAGA------UGGAAAUGCCGCGCGAGCGAGCGAGACGGUCGGGUGAG----GGAGGGAGAGGGCAAGUGUGCUCUAUCCGCCCUGUUGGCUGUA
.......------......((((((....))).)))..((((((((...((----((..(((.((((((....)))))).))).)))).)))))))). ( -35.70)
>DroEre_CAF1 18641 90 + 1
AAGCAGA------UGGAAAACCCGCGCGAGCGAGCGAGACGGUCGAGUGGGGCA--GAGAGAGAGGGCAAAUGUGCUCUAUCCGCCCUGUUGGCUGUA
..((...------.((....))(((....))).))...((((((((.((((((.--((...((((.((....)).)))).)).)))))))))))))). ( -37.30)
>DroYak_CAF1 18526 88 + 1
AAGCAGA------UGGAAAACCCGCACGAGAGAGCGAGACGGCCGGGUGAGG----GAGAGAGAGGGCAAAUGUGCUCUAUCCGCCCUGUUGGCUGUA
.......------.........(((.(....).)))..((((((((...(((----(.(.((.((((((....)))))).))).)))).)))))))). ( -31.10)
>DroAna_CAF1 21369 87 + 1
AAAAAAAAAAACCUGAAAAUGCAGUGCGCCAAAGGGGGUGGGCCGGGCGAGG----GAGAUAAAGUGC-------UUCUAUCCGCCCUGUUGGCUGUA
...................((((((.((((......))))(((.(((((.((----(((........)-------))))...))))).))).)))))) ( -25.60)
>consensus
AAGCAGA______UGGAAAUCCCGCGCGAGCGAGCGAGACGGCCGGGUGAGG____GAGAGAGAGGGCAAAUGUGCUCUAUCCGCCCUGUUGGCUGUA
......................(((........)))..(((((((((((.........((.((((.((....)).)))).)))))))....)))))). (-14.62 = -15.42 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:30 2006