Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,720,211 – 5,720,331 |
Length | 120 |
Max. P | 0.833788 |
Location | 5,720,211 – 5,720,331 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.39 |
Mean single sequence MFE | -38.46 |
Consensus MFE | -38.01 |
Energy contribution | -37.43 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.20 |
Mean z-score | -0.94 |
Structure conservation index | 0.99 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.833788 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5720211 120 - 20766785 GACUCGGAAGAGAUGCGUCUGGUGUCGCGCAUCUUCCAAACGGCCAAGUCGAUAGCCGAACUCAAACUGACUGAAACCGAACUGGCGCUGUAUCAGAGCUUAGUGCUGCUCUGGCCAGGU .....((((((..((((.(....).))))..))))))...(((...(((((................)))))....)))..(((((.......((((((........))))))))))).. ( -39.30) >DroVir_CAF1 21953 120 - 1 GACUCGGAUGAGAUGCGUCUGGUGUCGCGCAUUUUCCAAACGGCUAAAUCGAUAGCCGAACUAAAACUGACUGAAACCGAACUGGCGCUAUAUCAGAGUCUAGUGCUGCUCUGGCCAGGU ...((((..(((((((((........))))))))).....((((((......))))))..................)))).(((((.......((((((........))))))))))).. ( -37.21) >DroGri_CAF1 18379 120 - 1 GACUCGGAUGAGAUGCGUCUGGUGUCGCGCAUUUUCCAAACGGCUAAAUCCAUAGCCGAACUUAAACUGACUGAAACCGAACUGGCGCUUUACCAGAGUCUAGUGCUGCUCUGGCCAGGU ...((((..(((((((((........))))))))).....((((((......))))))..................)))).(((((.......((((((........))))))))))).. ( -37.21) >DroWil_CAF1 93123 120 - 1 GAUUCGGAGGAGAUGCGUCUAGUGUCGCGCAUUUUCCAAACGGCUAAAUCGAUAGCCGAACUAAAACUGACUGAAACUGAACUGGCGCUGUAUCAGAGUCUUGUAUUACUCUGGCCGGGU ..(((((.((((((((((........))))))))))....((((((......))))))............)))))......(((((.......((((((........))))))))))).. ( -37.81) >DroMoj_CAF1 19951 120 - 1 GAUUCGGAUGAGAUGCGUCUGGUGUCGCGCAUUUUCCAAACGGCUAAAUCGAUAGCCGAACUAAAACUGACUGAAACCGAACUGGCGCUAUAUCAGAGUCUAGUGCUGCUCUGGCCAGGU ..(((((..(((((((((........))))))))).....((((((......))))))..................)))))(((((.......((((((........))))))))))).. ( -38.01) >DroAna_CAF1 12991 120 - 1 GACUCGGAGGAGAUGCGCCUGGUGUCGCGCAUCUUCCAAACGGCCAAGUCGAUAGCCGAACUUAAACUGACUGAAACCGAACUGGCGCUGUACCAGAGUUUAGUAUUGCUCUGGCCAGGU ...((((.((((((((((........))))))))))....((((..........))))..................)))).(((((.......((((((........))))))))))).. ( -41.21) >consensus GACUCGGAUGAGAUGCGUCUGGUGUCGCGCAUUUUCCAAACGGCUAAAUCGAUAGCCGAACUAAAACUGACUGAAACCGAACUGGCGCUGUAUCAGAGUCUAGUGCUGCUCUGGCCAGGU ...((((..(((((((((........))))))))).....((((((......))))))..................)))).(((((.......((((((........))))))))))).. (-38.01 = -37.43 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:29 2006