Locus 1508

Sequence ID 2R_DroMel_CAF1
Location 5,707,779 – 5,707,876
Length 97
Max. P 0.899495
window2553

overview

Window 3

Location 5,707,779 – 5,707,876
Length 97
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.97
Mean single sequence MFE -37.03
Consensus MFE -18.84
Energy contribution -20.62
Covariance contribution 1.78
Combinations/Pair 1.14
Mean z-score -3.52
Structure conservation index 0.51
SVM decision value 1.01
SVM RNA-class probability 0.899495
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5707779 97 - 20766785
GGGGGGUCUAAUUAAUACGACCUCCCACCUACAGCCACCCACCGCCCAGAACAACCCACAACCACCUGCUGGUGUGGCACACUUAAGUGUGGG----CGGA
((((((((..........))))))))...............((((((........(((((.(((.....)))))))).((((....)))))))----))). ( -41.00)
>DroSec_CAF1 35571 97 - 1
GGGGGGUCUAAUUAAUACGACCUCCCACCUCCAGCCACCCAGUGCCCAGAACCACCCACAACCACCUGCUGGUGUGGCACACUUAAGUGUGGG----CGGA
((((((((..........)))))))).((.((.((((((((((........................))))).)))))((((....)))).))----.)). ( -38.76)
>DroSim_CAF1 38301 97 - 1
GGGGGGUCUAAUUAAUACGACCUCCCACCUCCAGCCACCCAGCGCCCAGAACCACCCACAACCACCUGCUGGUGUGGCACACUUAAGUGUGGG----CGGA
((((((((..........)))))))).((.((.(((((((((((......................)))))).)))))((((....)))).))----.)). ( -40.65)
>DroEre_CAF1 35899 97 - 1
GGGGUGUCUAAUUAAUACGACCUCCCACCACCAGCCACCCACCACCCAGCACCACCCACAACCACCUGCUGGUGGGGCACACUUAAGUGUGGG----CGGA
((((.(((..........))).))))....((.(((..((.(((((.((((...............)))))))))))(((((....)))))))----))). ( -35.26)
>DroYak_CAF1 36782 97 - 1
GGGGGGUCUAAUUAAUACGACCUCCCACCUCCAGCCACCCACCUCCCAGCCCCAUCCACAACCACCUGCUGGUGAGGCACACUUAAGUGUGGG----CGGA
((((((((..........))))))))...(((.(((.....(((((((((.................))))).))))(((((....)))))))----)))) ( -41.43)
>DroAna_CAF1 38557 87 - 1
AGGGGGCCUAAUUAAUACGUAUGUACAUCACCCGCCACCCACCACCCACCACU------GGCCACCUGC--------CGCACUCAAGUGGGUGUGCUUGUG
.((((((........(((....)))........))).))).........(((.------(((((((..(--------.........)..)))).))).))) ( -25.09)
>consensus
GGGGGGUCUAAUUAAUACGACCUCCCACCUCCAGCCACCCACCGCCCAGAACCACCCACAACCACCUGCUGGUGUGGCACACUUAAGUGUGGG____CGGA
((((((((..........))))))))...........((.....(((...............((((....))))..((((......))))))).....)). (-18.84 = -20.62 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:27 2006