Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,707,048 – 5,707,148 |
Length | 100 |
Max. P | 0.505603 |
Location | 5,707,048 – 5,707,148 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 77.64 |
Mean single sequence MFE | -33.07 |
Consensus MFE | -15.55 |
Energy contribution | -15.47 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.27 |
Mean z-score | -1.94 |
Structure conservation index | 0.47 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.505603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5707048 100 - 20766785 AAGCGGGCUACGUGCUUGGGUUAAUUUGUGGCUCCAAGUGUUGGCCCA-----GGGUGCAAAAGUCAUUGUUAC--UGGAUGUACAUACAAAUGUAUGUGCGUCUAU ....((((((.(..(((((((((.....)))).)))))..))))))).-----.(((((((......))).)))--)((((((((((((....)))))))))))).. ( -40.80) >DroPse_CAF1 31379 90 - 1 AAGCGGGCUACGUGCCCGGGUUAAUUUGCGGCCCGAAGUGUUGGCUGA-----GGGUGCGAAAGUCUCUGCUAA--UGUGUGC--------GUGUAUCU--GUGUAU ..(((((.((((..(.((((((.......))))))..(..(((((.((-----(...((....))))).)))))--..))..)--------)))..)))--)).... ( -31.00) >DroEre_CAF1 35162 100 - 1 AAGCGGGCUACGUGCUUGGGUUAAUUUGUGGCCCCAAGUGUUGGCCCA-----GGGUGCAAAAGUCAUUGUUAC--GGGGUGUACAUAGAAAUGUAUGUGAGUCUAU ....(((((((((((((((((((((...((....))...)))))))))-----).(((((...((.......))--....)))))........)))))).))))).. ( -29.70) >DroYak_CAF1 35691 102 - 1 AAGCGGGCUACGUGCUUGGGUUAAUUUGUGGCACCAAGUGUUGUCCCG-----GGGUGCAAAAGUCAUUGUUACUGGGGGUGUACAUAGAAAUGUAUGUGCGUCUAU ....((((.(((..(((((((((.....)))).)))))..)..(((((-----(...((((......))))..))))))))(((((((......))))))))))).. ( -31.20) >DroAna_CAF1 37018 103 - 1 AAGCGAGCUACGUGCUUGGGUUAAUUUGUGGCCCCAAGUGUUGGCCCAAGUGGGGGUGCGAAAGUCAUUGUUACUCUGAAUGU----UUGCUUGUAUGCCUACAUAU ((((((((..(.(((((((((((((...((....))...))))))))))))).)(((((....).))))............))----))))))(((((....))))) ( -34.70) >DroPer_CAF1 31109 90 - 1 AAGCGGGCUACGUGCCCGGGUUAAUUUGCGGCCCGAAGUGUUGGCUGA-----GGGUGCGAAAGUCUCUGCUAA--UGUGUGC--------GUGUAUCU--GUGUAU ..(((((.((((..(.((((((.......))))))..(..(((((.((-----(...((....))))).)))))--..))..)--------)))..)))--)).... ( -31.00) >consensus AAGCGGGCUACGUGCUUGGGUUAAUUUGUGGCCCCAAGUGUUGGCCCA_____GGGUGCAAAAGUCAUUGUUAC__UGGGUGU____A_AAAUGUAUGUG_GUCUAU .((((((((..(..(((((((((((...((....))...))))))))......)))..)...)))..)))))................................... (-15.55 = -15.47 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:26 2006