Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,704,184 – 5,704,275 |
Length | 91 |
Max. P | 0.860418 |
Location | 5,704,184 – 5,704,275 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 81.46 |
Mean single sequence MFE | -36.30 |
Consensus MFE | -26.17 |
Energy contribution | -28.87 |
Covariance contribution | 2.70 |
Combinations/Pair | 1.14 |
Mean z-score | -2.18 |
Structure conservation index | 0.72 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5704184 91 + 20766785 AGCAGCAGCGUUGGCGAGCGAGUGAGCGAAAUCCGCUCGAAUGCCAAGA-GUUGCGACGCCGAACGACGGCGGCGAACAUCAUCGUCGGCGU ....(((((.((((((..((((((.........))))))..))))))..-))))).(((((((.(((.(..(.....)..).)))))))))) ( -40.70) >DroSec_CAF1 31883 91 + 1 AGCAGCAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAGA-GUUGCGACGCCGAACGACGGCGGCGAACAUCAUCGUCGGCGU .......(((((((((((((..(((((((...)))))))..)))...((-(((.((.(((((.....))))).))))).)).)))))))))) ( -40.80) >DroSim_CAF1 34517 91 + 1 AGCAGCAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAGA-GUUGCGACGCCGAACGACGGCGGCGAACAUCAUCGUCGGCGU .......(((((((((((((..(((((((...)))))))..)))...((-(((.((.(((((.....))))).))))).)).)))))))))) ( -40.80) >DroEre_CAF1 32336 92 + 1 AGCAGAAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAAAUGUUGCGACGCCGAACGACGGCGGCGAACAUCGUCGUUGGCGC .......((((..(((((((..(((((((...)))))))..)))....(((((.((.(((((.....))))).)))))))..))))..)))) ( -42.00) >DroYak_CAF1 32952 91 + 1 AGCAGCAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAAA-GUUGCGACGUCGAACGAAGGCGGCGAACAUCAUCGUCGGCGC .......(((((((((((((..(((((((...)))))))..))).....-(((.((.((((.......)))).)))))....)))))))))) ( -37.10) >DroAna_CAF1 33784 69 + 1 --UAGUUGCGUUGCCGAGCGAAC--------UUCAAAUGAAACCGAAAA-G---------CCAACGACGACGUCGAACAGC---GUUGGCGA --.((((.((((....)))))))--------).................-(---------((((((.((....)).....)---)))))).. ( -16.40) >consensus AGCAGCAGCGUUGGCGAGCGAGUGAGCGGAAUCCGCUCGAAUGCCAAAA_GUUGCGACGCCGAACGACGGCGGCGAACAUCAUCGUCGGCGU .......(((((((((((((..((((((.....))))))..)))......(((.((.(((((.....))))).)))))....)))))))))) (-26.17 = -28.87 + 2.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:23 2006