Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,701,855 – 5,701,956 |
Length | 101 |
Max. P | 0.940299 |
Location | 5,701,855 – 5,701,956 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 91.17 |
Mean single sequence MFE | -29.61 |
Consensus MFE | -26.50 |
Energy contribution | -27.10 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.07 |
Mean z-score | -1.57 |
Structure conservation index | 0.90 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5701855 101 + 20766785 CGCUUGCAUCUGGAGCAGCUUUGUGUAGUUUA-----CGGCACAAAGCCUGGCUGGCAAAUUGGAAGUUGGGGUCAUCUGUUUGCAACAUCCCUGACAUUGGUCAA .((((.......)))).(((((((((.(....-----).))))))))).((((..(......(((.((((.((........)).)))).)))......)..)))). ( -29.00) >DroSec_CAF1 29570 96 + 1 CGCUUGCAUCUAGAGCAGCUUUGUGUACUUUA-----CUACAAAAAG-----CUGGCAAAUUGGAAGUUGGGGUCAUCUGUUUGCAACAUCCCUGACAUUUGUCAA .((((.......))))((((((.((((.....-----.)))).))))-----))(((((((.....((..(((.....((....))....)))..))))))))).. ( -26.60) >DroSim_CAF1 32214 106 + 1 CGCUUGCAUCUGGAGCAGCUUUGUGUACUUUACUCUACUACACAAAGCCUGGCUGGCAAAUUGGAAGUUGGGGUCAUCUGUUUGCAACAUCCCUGACAUUUGUCAA .((((((.......)))((((((((((...........))))))))))..)))((((((((.....((..(((.....((....))....)))..)))))))))). ( -30.70) >DroEre_CAF1 30025 101 + 1 CGCUUACAUCUGAAGCAGCUUUGUGUACUUUA-----UUGCACAAAGCCCGGCUGGCAAAUUGGAAGUUGGGGUCAUCAGUUUGCAACAUCCCUGACAUUUGUCAA .((((.(....))))).((((((((((.....-----.)))))))))).....((((((((.....((..(((.................)))..)))))))))). ( -29.93) >DroYak_CAF1 30628 101 + 1 CGCUUACAUCUGGAGCAGCUUUGUGUACUUUA-----CUGCACAAAGCCUGGCUGGCAAAUUGGAAGUUGGGGUCAUAUGUUUGCAACAUCCCUGACAUUUGUCAA .((((.......)))).((((((((((.....-----.)))))))))).....((((((((.....((..(((....((((.....)))))))..)))))))))). ( -31.80) >consensus CGCUUGCAUCUGGAGCAGCUUUGUGUACUUUA_____CUGCACAAAGCCUGGCUGGCAAAUUGGAAGUUGGGGUCAUCUGUUUGCAACAUCCCUGACAUUUGUCAA .((((.......)))).((((((((((...........)))))))))).....((((((((.....((..(((.....((....))....)))..)))))))))). (-26.50 = -27.10 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:22 2006