Locus 1503

Sequence ID 2R_DroMel_CAF1
Location 5,701,712 – 5,701,812
Length 100
Max. P 0.697480
window2547

overview

Window 7

Location 5,701,712 – 5,701,812
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 81.23
Mean single sequence MFE -18.09
Consensus MFE -4.88
Energy contribution -6.44
Covariance contribution 1.56
Combinations/Pair 1.18
Mean z-score -2.44
Structure conservation index 0.27
SVM decision value 0.34
SVM RNA-class probability 0.697480
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5701712 100 - 20766785
-AAUCAUAAAAAUAUUUGUCAUAGGAUUAAUAACGGCGCUCAUUUACUGAACCCACCAUAGAUAGGUAUAAUAAUCUCCAAGCAAUUCAAUCCCCUUGAUA
-...............(((((..(((((......((.(.(((.....))).)))(((.......))).....................)))))...))))) ( -12.40)
>DroSec_CAF1 29429 98 - 1
-AAUCAUAAAAAUAUUUGCCAUGGGAUUAAUAGCCGCGUUCAUUUACUGAACCCACAAUAGAUAGGUACAAUAAUCCCCCAGCAAUUCGAUC--CUUGAUA
-.((((.........((((...(((((((...((((.(((((.....))))).).(....)...)))....)))))))...)))).......--..)))). ( -19.97)
>DroSim_CAF1 32073 98 - 1
-AAUCAUAAAAAUAUUUGCCAUGGGAUUAAUACCCGCGUUCAUUUACUGAACCCACAAUAGAUAGGUACAAUAAUCCCCCAGCAAUUCGAUC--CUUGAUA
-.((((.........((((...(((((((.((((.(.(((((.....))))).).(....)...))))...)))))))...)))).......--..)))). ( -20.07)
>DroEre_CAF1 29911 82 - 1
----CAUAAAAAUAUUUGCCAUGGGAUUAA------------UUUACUAAGCCCACAAUAGAUAGGUAAAGUAAUCC-CACGCAAUUCGCUC--CUUGAUA
----...........((((..((((((((.------------((((((...(........)...)))))).))))))-)).)))).......--....... ( -17.60)
>DroYak_CAF1 30485 98 - 1
AAAACAUAACAAUAUUUGCAUUGGGAUUAAUACCCGCGUUCGUUUAUUAAACCCACAAUAGAUAUUUAAAAUAAUCC-CAAGCACUUCGGUC--CUUGAUU
..........((((((((...((((.((((((..((....))..)))))).))))...))))))))...........-((((.((....)).--))))... ( -20.40)
>consensus
_AAUCAUAAAAAUAUUUGCCAUGGGAUUAAUACCCGCGUUCAUUUACUGAACCCACAAUAGAUAGGUAAAAUAAUCCCCAAGCAAUUCGAUC__CUUGAUA
...............((((....((((((........(((((.....)))))((..........)).....))))))....))))................ ( -4.88 =  -6.44 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:21 2006