Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,687,535 – 5,687,634 |
Length | 99 |
Max. P | 0.808577 |
Location | 5,687,535 – 5,687,634 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 71.61 |
Mean single sequence MFE | -19.29 |
Consensus MFE | -8.62 |
Energy contribution | -9.15 |
Covariance contribution | 0.53 |
Combinations/Pair | 1.31 |
Mean z-score | -1.88 |
Structure conservation index | 0.45 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5687535 99 - 20766785 ACACUUU--CUCCUUCUUUAAAUGAAU-GGAAAAGUUUCCA--AAUCUGAAUACAAAGCCCUCAUUUUCUGUGCCGCAAUUUUCUGGACACAUGAGGGCUGUAA ..(((((--.((((((.......))).-)))))))).....--........((((..(((((((.....(((((((........))).))))))))))))))). ( -26.30) >DroPse_CAF1 21875 94 - 1 A-ACUUC--CUCCGCCCGAAACGAAAUUGAAAGACUUUCCCAAAAUCGAAAUGCAACACU-UCG----UUGUGUGGCCAUU--CUGAACUUGAGAGAAGUGUAA .-(((((--(((..........((((((....)).))))......(((.(((((.((((.-...----..)))).).))))--.)))....))).))))).... ( -17.80) >DroSec_CAF1 24473 85 - 1 A-AUUUUAAGUUCUCACUUUAAUAAAU-GGAAAAGUUUCCA--AAUCUGUAUACAAAGCCCUCAUUU---------------UCUGGACACAUGAGGGCUGUAA .-........................(-((((....)))))--........((((..((((((((..---------------.........)))))))))))). ( -18.10) >DroSim_CAF1 27139 84 - 1 ACACUUU--CUCCUCACUUUAAUAAAU-GGAAAAGUUUCCA--AAUCUGUAUACAAAGCCCUCAUUU---------------UCUGGACACAUGAGGGCUGUAA .......--.................(-((((....)))))--........((((..((((((((..---------------.........)))))))))))). ( -18.10) >DroEre_CAF1 25054 99 - 1 ACACUUU--CUCCUUUCUUUAAUAAAU-GGAAAAGUUUCCA--AAUCUAAAUACAAAGCCCUUAUUUUCUGUGCCGCAAUUUUCUGGACACAUGAGGGCUGUAA .......--.................(-((((....)))))--........((((..(((((((.....(((((((........))).))))))))))))))). ( -21.60) >DroYak_CAF1 25571 99 - 1 ACACUUU--CUCUUUCUUUUAAUAAGU-GCAAACGUUUCCA--AAUCUAAAUUCAAAGCUUUUAUUUUCUGUGCCGCAAUUUUCUGGACACAUGAGGGCUGUAA .(((((.--..............))))-)............--.............((((((((.....(((((((........))).)))))))))))).... ( -13.86) >consensus ACACUUU__CUCCUCCCUUUAAUAAAU_GGAAAAGUUUCCA__AAUCUAAAUACAAAGCCCUCAUUU_CUGUGCCGCAAUU_UCUGGACACAUGAGGGCUGUAA ............................((((....))))...........((((..((((((((..........................)))))))))))). ( -8.62 = -9.15 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:18 2006