Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,685,695 – 5,685,785 |
Length | 90 |
Max. P | 0.747296 |
Location | 5,685,695 – 5,685,785 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 90.88 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -25.20 |
Energy contribution | -24.70 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.12 |
Mean z-score | -1.43 |
Structure conservation index | 0.89 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747296 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5685695 90 - 20766785 GCUUCAAACGAGCAUUUCGGGCCCGCUAGCAAAAAGCUG-UUCAUAAAUUGCAUGUUGGCUUUUGUGUUGGCAUGUCGCUCCCGAGGAC-----------CC ((((.....)))).(((((((...((((((.....))))-..........((((((..((......))..)))))).)).)))))))..-----------.. ( -28.40) >DroPse_CAF1 20577 91 - 1 GCUUCAAACGAGCAUUUCGGGCCCGCCAGCAAAAAGCUGCUUCAUAAAUUGCAUGUUGGCUUUUGUGUUGGCAUGUCGCCCCCGCCCAC-----------UC ((((.....)))).....((((..((((((.....))))...........((((((..((......))..)))))).))....))))..-----------.. ( -28.20) >DroSec_CAF1 22624 90 - 1 GCUUCAAACGAGCAUUUCGAGCCCGCCAGCAAAAAGCUG-UUCAUAAAUUGCAUGUUGGCUUUUGUGUUGGCAUGUCGCUCCCGAGGAC-----------CC .((((....((((.....(....)(((((((((((((((-..(((.......))).)))))))).))))))).....))))..))))..-----------.. ( -25.30) >DroYak_CAF1 23572 90 - 1 GCUUCAAACGAGCAUUUCGGGCCCGCCAGCAAAAAGCUG-UUCAUAAAUUGCAUGUUGGCUUUUGUGUUGGCAUGUCGCUCCCGAGGAC-----------CC ((((.....)))).(((((((..((.((((.....))))-..........((((((..((......))..))))))))..)))))))..-----------.. ( -29.90) >DroAna_CAF1 24978 101 - 1 GCUUCAAACGAGCAUUUCGGGCCCGCCAGCAAAAAGCUG-UUCAUAAAUUGCAUGUUGGCUUUUGUGUUGGCAUGUCGCUCCCGUUGCCGCUUCCCUUCUCC ........((.(((...((((..((.((((.....))))-..........((((((..((......))..))))))))..)))).)))))............ ( -29.10) >DroPer_CAF1 20381 91 - 1 GCUUCAAACGAGCAUUUCGGGCCCGCCAGCAAAAAGCUGCUUCAUAAAUUGCAUGUUGGCUUUUGUGUUGGCAUGUCGCCCUCGCCCAC-----------UC ((((.....)))).....((((..((((((.....))))...........((((((..((......))..)))))).))....))))..-----------.. ( -28.20) >consensus GCUUCAAACGAGCAUUUCGGGCCCGCCAGCAAAAAGCUG_UUCAUAAAUUGCAUGUUGGCUUUUGUGUUGGCAUGUCGCUCCCGAGGAC___________CC ((((.....)))).....((((..(((((((((((((((...(((.......))).)))))))).))))))).....))))..................... (-25.20 = -24.70 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:17 2006