Locus 150

Sequence ID 2R_DroMel_CAF1
Location 1,417,838 – 1,417,958
Length 120
Max. P 0.888616
window335

overview

Window 5

Location 1,417,838 – 1,417,958
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.16
Mean single sequence MFE -29.38
Consensus MFE -22.55
Energy contribution -21.63
Covariance contribution -0.92
Combinations/Pair 1.32
Mean z-score -2.15
Structure conservation index 0.77
SVM decision value 0.95
SVM RNA-class probability 0.888616
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1417838 120 + 20766785
AGGUUUGGCAUUCGGAAAGGCAGUUUAUUGCUAAUUUCAGUUGCCAAAAGCUUGGGCAUUUUAUUAAAAAGCAACGACAUCAACAUUGCCAACAAAAUUAUUUCGAAUGUCAGUGACAAA
..(((((((((((((((.(((((....))))).......((((((((....))))...............((((.(.......).)))))))).......))))))))))))..)))... ( -26.90)
>DroSec_CAF1 36299 120 + 1
AGGUUUGGCAUUCGGAAAGGCAGUUUAUUGCUAAUUUCAGUUGGCAAAAGCUUGGGCAUUUUAUUAAAAAGCAACGACAUCAACAUUGCCAACAAAAUUAUUUCGAAUGUCAGCGACAAA
..(((((((((((((((.(((((....))))).......((((((((..((((...............))))...(....)....)))))))).......))))))))))))..)))... ( -33.56)
>DroSim_CAF1 41316 120 + 1
AGGUUUGGCAUUCGGAAAAGCAGUUUAUUGCUAAUUUCAGUUGGCAAAAGCUUGGGCAUUUUAUUAAAAAGCAACGACAUCAACAUUGCCAACAAAAUUAUUUCGAAUGUCAGCGACAAA
..(((((((((((((((.(((((....))))).......((((((((..((((...............))))...(....)....)))))))).......))))))))))))..)))... ( -33.56)
>DroEre_CAF1 34879 117 + 1
AGGUUUGGCAUUCGGAAAGGCAGUUUAUUGCCAGUUUUAGUUGCCAAAA-GCUGGGCAUUUUAUUAAAAAGCAACGACAUCAACAUGGCCAACCAAAUUAUUUCGAAUGCCAGCGACA--
..(((((((((((((((.(((((....)))))..(((((((((((....-....))))....)))))))................(((....))).....))))))))))))..))).-- ( -32.40)
>DroYak_CAF1 35645 119 + 1
AAGUUUGGUAUUUGAAAAGGUAGUUUAUUGCUAAUUUUAGUUGCCAAAG-CUUGGGCAUUUUAUUAAAAAGAAACGACAUCAACAUUGCCAACAAAAUUAUUUCGAAUGUCAGCGCCAAA
..(((.(..((((((((.(((((....)))))((((((.((((.(((.(-.((((.(.((((........)))).)...))))).))).)))))))))).))))))))..))))...... ( -20.50)
>consensus
AGGUUUGGCAUUCGGAAAGGCAGUUUAUUGCUAAUUUCAGUUGCCAAAAGCUUGGGCAUUUUAUUAAAAAGCAACGACAUCAACAUUGCCAACAAAAUUAUUUCGAAUGUCAGCGACAAA
....(((((((((((((.(((((....)))))......................((((............................))))..........)))))))))))))....... (-22.55 = -21.63 +  -0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:10 2006