Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,681,322 – 5,681,431 |
Length | 109 |
Max. P | 0.864072 |
Location | 5,681,322 – 5,681,431 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 79.49 |
Mean single sequence MFE | -36.11 |
Consensus MFE | -20.81 |
Energy contribution | -21.87 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.08 |
Mean z-score | -2.22 |
Structure conservation index | 0.58 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5681322 109 - 20766785 UUCUGGAGUGCCGUGGAGCGAAGAGGGGGG-GCAGCUGAAAUGGCGCACAGAACGUGGCAGUAAUGCAGCAGCAAGUGGCACAAGUAGCAGCUGCCAC-GUUUUGCAGCAG ..(((..(((((((..(((...........-...)))...))))))).((((((((((((((..(((.((.((.....))....)).)))))))))))-)))))))))... ( -42.24) >DroPse_CAF1 16785 92 - 1 ---AGGCGUGCCA----------CGGAAGA-GCA-CUGCAACGGC----GGAACGUGGCAGUAAUGCAGCAGCAAGUGGCACAAGUAGCAGCUUGCACAGUUUUGUGGCAG ---.....(((((----------(((((..-(((-((((.(((..----....))).)))))...))....((((((.((.......)).))))))....)))))))))). ( -36.30) >DroSec_CAF1 18322 99 - 1 UUCAGGAGUGCGG----------AGGUGGG-GCAGCUGAAAUGGCGCACGGAACGUGGCAGUAAUGCAGCAGCAAGUGGCACAAGUAGCAGCUGCCAC-GUUUUGCAGCAG (((((..((.(..----------.....).-))..)))))...((...((((((((((((((..(((.((.((.....))....)).)))))))))))-))))))..)).. ( -35.30) >DroSim_CAF1 20945 100 - 1 UUCAGGAGUGCGG----------AGGAGGGAGCAGCUGAAAUGGCGCACGGAACGUGGCAGUAAUGCAGCAGCAAGUGGCACAAGUAGCAGCUGCCAC-GUUUUGCAGCAG (((((...(((..----------........))).)))))...((...((((((((((((((..(((.((.((.....))....)).)))))))))))-))))))..)).. ( -34.90) >DroYak_CAF1 19192 89 - 1 ------------------GGAUGAG--GGA-GCAGCUGAAAUGGCGCACGGAACGUGGCAGUAAUGCAGCAGCAAGUGGCACAAGUAGCAGCUGCCAC-GUUUUGCAGCAG ------------------.......--...-((.(((.....)))(((..((((((((((((..(((.((.((.....))....)).)))))))))))-))))))).)).. ( -32.30) >DroPer_CAF1 16643 92 - 1 ---AGGCGUGCCA----------CGGAAGA-GCA-CUGCAACAGC----GGAACGUGGCAGUAAUGCAGCAGCAAGUGGCACAAGUAGCAGCUUGCACAGUUUUGUGGCAG ---.....(((((----------(((((..-((.-((((....))----))......(((....))).)).((((((.((.......)).))))))....)))))))))). ( -35.60) >consensus ___AGGAGUGCCG__________AGGAGGA_GCAGCUGAAAUGGCGCACGGAACGUGGCAGUAAUGCAGCAGCAAGUGGCACAAGUAGCAGCUGCCAC_GUUUUGCAGCAG ...............................((.(((.....)))...((((((((((((((..(((.((.((.....))....)).))))))))))).))))))..)).. (-20.81 = -21.87 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:15 2006