Locus 1497

Sequence ID 2R_DroMel_CAF1
Location 5,676,814 – 5,676,923
Length 109
Max. P 0.786215
window2540

overview

Window 0

Location 5,676,814 – 5,676,923
Length 109
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 88.10
Mean single sequence MFE -37.72
Consensus MFE -30.53
Energy contribution -29.45
Covariance contribution -1.08
Combinations/Pair 1.26
Mean z-score -1.68
Structure conservation index 0.81
SVM decision value 0.57
SVM RNA-class probability 0.786215
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5676814 109 + 20766785
UUGAACGGGGAGUUCCGACCUGGUGUGGUAUUUUUUUGAUUUGCUCAGGGAUGAGCGAUUCCAGGCAGGAGUUGUUUACCCGGCACUCAAUGUUGGUUCC--CCCUCCAUG
......((((.(..(((((.((((((((((...........))))..(((.(((((((((((.....)))))))))))))).)))).))..)))))..))--)))...... ( -39.50)
>DroSec_CAF1 14158 107 + 1
UUGAACGGGGAGUUCCGACCUGGUCUGGUAUUU--UUGAUUUGCUUAGGGAUGAGCGAUUCCAGGCAGGAGUUGUUUACCCGGCACUCAAUGUUGGUUCC--CCCAUCAUG
......((((.(..((((((......)))....--((((..((((..(((.(((((((((((.....)))))))))))))))))).))))...)))..))--)))...... ( -38.20)
>DroSim_CAF1 15209 110 + 1
UUGAACGGGGAGUUCCGACCUGGUCUGGUAUUU-UUUGAUUUGCUUAGGGAUGAGCGAUUCCAGGCAGGAGUUGUUUACCCGGCACUCAAUGCUGGUUCCCCCCCAUCAUG
.(((..((((.(..((((((......)))....-.((((..((((..(((.(((((((((((.....)))))))))))))))))).))))...)))..).))))..))).. ( -38.30)
>DroEre_CAF1 14428 104 + 1
-----CGGGAAGCUCCGACCUGGUUUGGUAUUU--GUGAUUUGCUUGGGGAUGAGCGGUUCCAGGCAGGAGUUGUUUACACGGCACUCAAUGCUGUUCCCCCCCCUUCAUG
-----.((((((((((.(((......)))....--......(((((((((........)))))))))))))))......((((((.....))))))))))........... ( -33.80)
>DroYak_CAF1 14709 102 + 1
-----CGGGGAGUUCCGACCUGGUUUGGUAUUU--UUGAAUUGCUUAGGGAUGAGCGAUUCCAGGCAGGAGUUGUUUACACGGCACUCAGUGUCGGUUC--CCCCUUCAUG
-----.((((.(..(((((((((((..(.....--)..)))((((...(..(((((((((((.....)))))))))))..)))))..))).)))))..)--))))...... ( -38.80)
>consensus
UUGAACGGGGAGUUCCGACCUGGUCUGGUAUUU__UUGAUUUGCUUAGGGAUGAGCGAUUCCAGGCAGGAGUUGUUUACCCGGCACUCAAUGUUGGUUCC_CCCCUUCAUG
......(((.((((((..(((((.................(((((((....)))))))..)))))..))))))......((((((.....))))))......)))...... (-30.53 = -29.45 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:14 2006