Locus 1496

Sequence ID 2R_DroMel_CAF1
Location 5,671,287 – 5,671,382
Length 95
Max. P 0.764894
window2539

overview

Window 9

Location 5,671,287 – 5,671,382
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 78.21
Mean single sequence MFE -22.74
Consensus MFE -16.20
Energy contribution -16.68
Covariance contribution 0.48
Combinations/Pair 1.13
Mean z-score -1.60
Structure conservation index 0.71
SVM decision value 0.51
SVM RNA-class probability 0.764894
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5671287 95 + 20766785
CCCUAGAAAAUAGAGUGAAAAGAGUAAAUAAACCAAAAUUCCUUAUACUGUCAAUUUGGGCGCCCCAAUUUUCCUCGUGGAAAGUGAGUGCGCCU
..(((.....)))((((.((.((((............)))).)).))))........((((((.(..(((((((....)))))))..).)))))) ( -21.30)
>DroSec_CAF1 8694 87 + 1
CCCUAGAAAAUAGAGUAAAAAAACCA--------AAAAUUCCUUAGACUGUCAAUUUGGGCGCCCUAAUUUUCCCCGUGGAAAUUGAGUGCGCCU
..(((.....))).............--------.......................((((((.((...(((((....)))))...)).)))))) ( -17.30)
>DroSim_CAF1 8706 95 + 1
CCCUAGAAAACAGAGUGAAAAAAGUAAAUAAACCAAAAUUCCUUAGACUGUCAUUUUGGGCGCCCUAGUUUUCCCCGUGGAAAUUGAGUGCGCCU
..........((((((((....(((...(((...........))).))).))))))))(((((.((...(((((....)))))...)).))))). ( -24.70)
>DroEre_CAF1 8809 95 + 1
GCCUAGCAAAUUGGUAAAAUAAAGUAAAAAGCCCAAAAUUCUUUCGGCUGUCAAUUUGGGCGCCCUAAUUUUCACCGUGGAAAGUGAGUGCGCCU
......((((((((...............((((.(((....))).)))).))))))))(((((.((.((((((......)))))).)).))))). ( -24.89)
>DroYak_CAF1 8829 86 + 1
CCCUAG---------AAAAUAGAGUAGCAAACCCGAUAUUCUUUUGAUUGUCAACUUGGGCGCCUUUAUUUUCCCCGUGGAAAGUGAGUGCGCCU
..(((.---------....)))............((((.((....)).)))).....((((((.((((((((((....)))))))))).)))))) ( -25.50)
>consensus
CCCUAGAAAAUAGAGUAAAAAAAGUAAAAAAACCAAAAUUCCUUAGACUGUCAAUUUGGGCGCCCUAAUUUUCCCCGUGGAAAGUGAGUGCGCCU
.........................................................((((((.((.(((((((....))))))).)).)))))) (-16.20 = -16.68 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:13 2006