Locus 1492

Sequence ID 2R_DroMel_CAF1
Location 5,660,764 – 5,660,870
Length 106
Max. P 0.517248
window2531

overview

Window 1

Location 5,660,764 – 5,660,870
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 77.70
Mean single sequence MFE -41.98
Consensus MFE -27.42
Energy contribution -28.23
Covariance contribution 0.81
Combinations/Pair 1.30
Mean z-score -1.17
Structure conservation index 0.65
SVM decision value -0.03
SVM RNA-class probability 0.517248
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5660764 106 - 20766785
CUCGAGCGCCGGUUCCCUGGCCCAGUUUCCUGAUCGGAAUCGGGAUCGGGAUCAGGAUCGUCGAGGGCAUGGCGAAGGGGAAGGGGAUCAGGCUGAGGAGCAGGCG
......((((((((((((..(((....((((((((....(((....)))))))))))((((((......)))))).)))..))))))))..(((....))).)))) ( -45.20)
>DroSec_CAF1 2289 94 - 1
CUCGAGCGCCGGUUCCCUGGCCCAGUUUCCCGAUCGGGAUCG------------GGAUCGACGAGAGCAUGGCGAAGGGGAAGGGGAUCAGGCUGAGGAGCAGGCC
.......(((((((((((..(((....(((((((....))))------------)))(((.(.(.....).)))).)))..))))))))..(((....))).))). ( -39.30)
>DroSim_CAF1 2306 94 - 1
CUCGAGCGCCGGUUCCCUGGCCCAGUUCCCUGAUCGGGAUCG------------GGAUCGACGAGAGCGUGGCGAAGGGGAAGGGGAUCAGGCUGAGGAGCAGGCC
.......(((.(((((..((((..(((((((..((....(((------------....((.(....)))...)))..))..)))))))..))))..))))).))). ( -36.70)
>DroEre_CAF1 2168 100 - 1
CUUGAGCGCCGGUUCCCUGGCCCAGUUUCCUGAUCAGGAUCG------GGAUCAGGACCGUCGAGGGCAGGGCGAAGGGGAAGGGGAUCAGGCUGAGGAGCGGGCC
.......(((((((((((..(((....((((((((.......------.)))))))).((((........))))..)))..))))))))..(((....))).))). ( -42.40)
>DroYak_CAF1 2485 94 - 1
CUUGAGCGCCGGUUCCCUGGCCCAGUUUCCUGAU------CG------CGAUCAGGAUUGUCGAGGGCAAGGCGAAGGGGAAGGGGAUCAGGCUGAGGAGCGGGCC
.......(((((((((((..(((....(((((((------..------..)))))))(((((........))))).)))..))))))))..(((....))).))). ( -40.00)
>DroAna_CAF1 2211 94 - 1
CUCCAGUGCCGGCUCCCUGGCCCAGUUUCCCGACCCGGAACC------AG----AGAUCCAG--GUCCAUGUGGUUUCCGAGCGGGAUCAAGGCCAGGAGCUGGUC
.......(((((((((.(((((.....(((((.(.(((((((------(.----((((....--)))..).))).))))).))))))....)))))))))))))). ( -48.30)
>consensus
CUCGAGCGCCGGUUCCCUGGCCCAGUUUCCUGAUCGGGAUCG_______G____GGAUCGACGAGGGCAUGGCGAAGGGGAAGGGGAUCAGGCUGAGGAGCAGGCC
.......(((.(((((..((((..((((((((((....)))................(((((........)))))......)))))))..))))..))))).))). (-27.42 = -28.23 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:06 2006