Locus 1490

Sequence ID 2R_DroMel_CAF1
Location 5,658,832 – 5,658,923
Length 91
Max. P 0.967983
window2529

overview

Window 9

Location 5,658,832 – 5,658,923
Length 91
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 85.47
Mean single sequence MFE -30.47
Consensus MFE -26.55
Energy contribution -26.75
Covariance contribution 0.20
Combinations/Pair 1.17
Mean z-score -2.66
Structure conservation index 0.87
SVM decision value 1.62
SVM RNA-class probability 0.967983
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5658832 91 + 20766785
CACAU-----ACUUCCAAUGGAAUUAAUUAGACUGCGGUAAUACCUUUGUAUUGGUCGCUGUAUGCUGCACAUGCGGCGGCAUGGGGGUUUGUGUG
((((.-----(((((((.....................((((((....))))))(((((((((((.....))))))))))).))))))).)))).. ( -32.60)
>DroSec_CAF1 317 91 + 1
CACAU-----ACUUCCAAUCAAAUUAAUUAGACUGCGGUAAUACCUUUGUAUUGGUCGCUGUAUGCUGCAUAUGCGGCGGCAUGGGGGUUUGUGUG
((((.-----(((((((.....................((((((....))))))(((((((((((.....))))))))))).))))))).)))).. ( -30.50)
>DroSim_CAF1 316 91 + 1
CACAU-----ACUUCCAAUUAAAUUAAUUAGACUGCGGUAAUACCUUUGUAUUGGUCGCUGUAUGCUGCAUAUGCGGCGGCAUGGGGGUUUGUGUG
((((.-----(((((((.....................((((((....))))))(((((((((((.....))))))))))).))))))).)))).. ( -30.50)
>DroEre_CAF1 319 96 + 1
CACAUACUAUACUUCCAAUUCAAUUGAUUAGACUUGGGUAAUACCUUUGUGUUGGUCGCUGUAUGCUGCACAUGGGGCGGCAUGGGGGUUUGUGUG
..(((((...(((((((..............((..(((.....)))..))....((((((.((((.....)))).)))))).)))))))..))))) ( -31.20)
>DroYak_CAF1 316 89 + 1
CACAU-----ACUUCCAAUUCAAUUAAUUAGA-UUGGGU-AUACCUUUGUAUUGGUCGCUGUAUGCUGCACAUGCGGCGGCAUGGGGGUUUGUGUG
((((.-----(((((((((((((((.....))-))))))-..............(((((((((((.....))))))))))).))))))).)))).. ( -34.60)
>DroAna_CAF1 322 79 + 1
CAGGC-----ACUUGGA------------AGAGUUUCUUAUUACCUUUGUAUUGGUCGCUGUAUGCUGCAUGUGCGGCGGCAUGGGGGUUUGUGUG
...((-----((....(------------((.....)))...(((((..(....((((((((((.......)))))))))))..)))))..)))). ( -23.40)
>consensus
CACAU_____ACUUCCAAUUAAAUUAAUUAGACUGCGGUAAUACCUUUGUAUUGGUCGCUGUAUGCUGCACAUGCGGCGGCAUGGGGGUUUGUGUG
(((((.....(((((((.....................((((((....))))))(((((((((((.....))))))))))).)))))))..))))) (-26.55 = -26.75 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:04 2006