Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,417,582 – 1,417,682 |
Length | 100 |
Max. P | 0.665797 |
Location | 1,417,582 – 1,417,682 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 69.55 |
Mean single sequence MFE | -21.99 |
Consensus MFE | -13.39 |
Energy contribution | -15.28 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.05 |
Mean z-score | -1.33 |
Structure conservation index | 0.61 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1417582 100 - 20766785 ---AUAUCUCGUAGAGGAAGACG-------------AUAUACUAGACUCGAUGAAAUGUCUGAAACCUGCGAUGAUUUAGUCUUGUCCUACGAAGCAUUACGGUGACAAAAUAUCA ---.....((((((.(.(((((.-------------......(((((..........)))))....(......).....))))).).))))))........(....)......... ( -18.40) >DroSec_CAF1 35880 82 - 1 AGUAGAUCUCGUAGAUAUAGA---------------------------CGAUGAAGUUUCUGAAAUCUGCGAUGAUUUAUUCUUGUCC-------UAUUACGGUGACAAAAUAUCA ((((((((((((((((..(((---------------------------(......)))).....)))))))).)))))))).((((((-------(.....)).)))))....... ( -20.60) >DroSim_CAF1 40888 116 - 1 AGUAGAUCUCGUAGAGAAAGACAUUGACAUAUAGAUAUGUACUAGACUCGAUAAGGUGUCUGAAAUCUGCGAUGAUUUAUUCUUGCCAUACGAAGUAUUACGGUGACAAAAUAUCA (((((((((((((((...(((((((.(((((....)))))..............)))))))....))))))).)))))))).(..((((((...))))...))..).......... ( -26.96) >consensus AGUAGAUCUCGUAGAGAAAGAC______________AU_UACUAGACUCGAUGAAGUGUCUGAAAUCUGCGAUGAUUUAUUCUUGUCCUACGAAGUAUUACGGUGACAAAAUAUCA .((((((((((((((...(((((.................................)))))....))))))).))))))).....................(....)......... (-13.39 = -15.28 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:09 2006