Locus 1489

Sequence ID 2R_DroMel_CAF1
Location 5,653,746 – 5,653,846
Length 100
Max. P 0.624587
window2528

overview

Window 8

Location 5,653,746 – 5,653,846
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.12
Mean single sequence MFE -20.53
Consensus MFE -16.21
Energy contribution -16.60
Covariance contribution 0.39
Combinations/Pair 1.24
Mean z-score -1.43
Structure conservation index 0.79
SVM decision value 0.19
SVM RNA-class probability 0.624587
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5653746 100 - 20766785
UAACUGUUGACGCGCUUCAGCAGUGCGAAGUAGCUGUAGGAGCAGUUGACGAUCUGAAAGGAGAAGAGCAUAACCAGU--A--AUAAAUGAUAUAUAAAGGAAU
..(((((..((..(((((.(((((........))))).))))).))..))..(((....))).............)))--.--..................... ( -23.00)
>DroVir_CAF1 25428 103 - 1
UAACUGUUGACACGCUUGAGCAGAGCAAAGUAGCUGUAGGAGCAGUUCACAAUCUGUAAAUUUAAAAUGAUUAUUAGUAUGAUAUG-AUUAAUUAAUAAGCACA
.............(((((.(((((.....((((((((....)))))).))..)))))..........(((((((.........)))-)))).....)))))... ( -17.90)
>DroSec_CAF1 10644 99 - 1
UAACUGUUGACGCGCUUCAGCAGUGCGAAGUAGCUGUAGGAGCAGUUAACAAUCUGAAAGAAAAAGACCAUAACUAGA--A--AUU-GUGAAAUAUAAAGGACC
....(((((((..(((((.(((((........))))).))))).))))))).................(((((.....--.--.))-))).............. ( -22.10)
>DroSim_CAF1 10839 99 - 1
UAACUGUUGACGCGCUUCAGCAGUGCGAAGUAGCUGUAGGAGCAGUUAACAAUCUGAAAGAAAAAGAGGAUAACUAGU--A--AUU-GUGAAAUAUAAAGGACU
....(((((((..(((((.(((((........))))).))))).)))))))((((............)))).......--.--...-................. ( -21.30)
>DroEre_CAF1 10443 98 - 1
UAACUGUUGACACGCUUUAGCAGAGCGAAGUAGCUGUAGGAGCAAUUAACAAUCUGAAAGAAAAACAAUAUAAAUAGU--U--AUU-GUGAUAU-UAAAGGACU
....((((((...((((..((((..........))))..))))..)))))).(((.........((((((........--)--)))-)).....-....))).. ( -17.77)
>DroYak_CAF1 10492 99 - 1
UAACUGUUGACGCGUUUCAGCAGUGCGAAGUAGCUGUAAGAACAGUUAACAAUCUGAAAGAAAAAGAACAUAACUAGU--U--AUU-GAGCUAUAUAAAGGACU
..((((((((......)))))))).....((((((.(((.((((((((....(((.........)))...))))).))--)--.))-))))))).......... ( -21.10)
>consensus
UAACUGUUGACGCGCUUCAGCAGUGCGAAGUAGCUGUAGGAGCAGUUAACAAUCUGAAAGAAAAAGAACAUAACUAGU__A__AUU_GUGAAAUAUAAAGGACU
....(((((((..(((((.(((((........))))).))))).)))))))..................................................... (-16.21 = -16.60 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:03 2006