Locus 1488

Sequence ID 2R_DroMel_CAF1
Location 5,646,434 – 5,646,531
Length 97
Max. P 0.990477
window2527

overview

Window 7

Location 5,646,434 – 5,646,531
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 93.92
Mean single sequence MFE -20.20
Consensus MFE -17.48
Energy contribution -18.12
Covariance contribution 0.64
Combinations/Pair 1.08
Mean z-score -2.00
Structure conservation index 0.87
SVM decision value 2.22
SVM RNA-class probability 0.990477
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5646434 97 + 20766785
AUAGAAAAACGCUAUUUACAGAUAUUUGGUUGGAAAUUUUCCAUAACGAGAGCAAAUGAAAAUCAUUCAGUUUGUCAUUUGCAUGAUCACAAAAUCA
....................(((.((((..((((.....))))...)))).((((((((((((......)))).))))))))...)))......... ( -16.50)
>DroSec_CAF1 3269 97 + 1
AAUGAAAAACGCUAUAUACAAAUAUUUCGGUGGAAAUUUUCCAUAACGAGAGCAAAUGAAAAUCAUUCAGUUUGUCAUUUGCAUGAUCACAAAAUCA
..(((...................((((((((((.....)))))..)))))((((((((((((......)))).))))))))....)))........ ( -18.60)
>DroSim_CAF1 3498 97 + 1
AGUGAAAAACGCUAUAUACAGAUAUUUCGGUGGAAAUUUUCCAUAACGAGAGCAAAUGAAAAUCAUUCAGUUUGUCAUUUGCAUGAUCACAAAAUCA
.((((...................((((((((((.....)))))..)))))((((((((((((......)))).))))))))....))))....... ( -22.40)
>DroEre_CAF1 3025 96 + 1
AGUGGAAUA-GCUACGUACAGAUAUUUUGGUGGAAAUUUUCCAUAACGAGAGCAAAUGAAAAUCAUUCAGUUUGUCAUUUGCAUGAUCACAAAAUCA
.((((....-.((.(((.((((...))))(((((.....))))).))))).((((((((((((......)))).))))))))....))))....... ( -20.20)
>DroYak_CAF1 3040 97 + 1
AGUGGAAAACGCUAGGUACAGAUAUUUCGGUGGAAAUUUUCCAUAACGAGAGCAAAUGAAAAUCAUUCAGUUUGUCAUUUGCAUGAUCACAAUAUCA
((((.....)))).......((((((((((((((.....)))))..)))))((((((((((((......)))).))))))))..........)))). ( -23.30)
>consensus
AGUGAAAAACGCUAUAUACAGAUAUUUCGGUGGAAAUUUUCCAUAACGAGAGCAAAUGAAAAUCAUUCAGUUUGUCAUUUGCAUGAUCACAAAAUCA
.((((...................((((((((((.....)))))..)))))((((((((((((......)))).))))))))....))))....... (-17.48 = -18.12 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:02 2006