Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,642,448 – 5,642,559 |
Length | 111 |
Max. P | 0.878382 |
Location | 5,642,448 – 5,642,559 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.83 |
Mean single sequence MFE | -30.31 |
Consensus MFE | -26.14 |
Energy contribution | -26.18 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.64 |
Structure conservation index | 0.86 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5642448 111 + 20766785 CGGGCUUGAAUGGUUUCAGCCUUUGUCCUGGCUUUUUCCCACAAUCGAAA-UUAUAUAAGAGAUGGCUUUAAGGCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU--------AAGCGGA .(((((.(((....))))))))...(((..((((.(((((.....((((.-........(((((((((....))))))))).........))))....)))))..--------))))))) ( -32.87) >DroSec_CAF1 9066 109 + 1 CGGGCU--AAUGGCUUCAGCCUUUGUCCUGCCUUUUUCCCACAUUCGAAC-UUAUAUAAGAGAUGGCUUUAAGGCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU--------AAGCGGC .((((.--...(((....)))...)))).(((..................-........(((((((((....)))))))))((((((.(....).))))))....--------....))) ( -32.10) >DroSim_CAF1 9201 109 + 1 CGGGCU--AAUGGCUUCAGCCUUUGUCCUGCCUUUUUCCCACAUUCGAAC-UUAUAUAAGAGAUGGCUUUAAGGCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU--------AAGCGGC .((((.--...(((....)))...)))).(((..................-........(((((((((....)))))))))((((((.(....).))))))....--------....))) ( -32.10) >DroEre_CAF1 9540 118 + 1 CGGGCU--AAUGGCUUUAGCUUUUGUCCUGCCUUUUUCCCACAUUCGAUUUUUACAUAAGAGAAGGCUUAAAGGCCAUUUCCCCUUGCCAUUUGUCAAGGGAACUAACCAACUAACCGGA (((...--(((((((((.((....))...((((((((......................))))))))...)))))))))..((((((.(....).))))))..............))).. ( -28.95) >DroYak_CAF1 9084 110 + 1 CGGGCU--AAUGGCUUCAGCUUUUGUCCUGCCUUUUUCCCACACUCGAGUUUUACAUAAGAGAAGGCUUUAAGCCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU--------AGUCGGA .(((((--...(((....)))........((((((((......................))))))))....)))))..((((.((((.(....).))))))))..--------....... ( -25.55) >consensus CGGGCU__AAUGGCUUCAGCCUUUGUCCUGCCUUUUUCCCACAUUCGAAC_UUAUAUAAGAGAUGGCUUUAAGGCCAUUUCCUCUUGCCAUUUGUCAAGGGAACU________AAGCGGA .((((......(((....)))...))))..........((...................(((((((((....)))))))))((((((.(....).))))))................)). (-26.14 = -26.18 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:06:01 2006