Locus 1485

Sequence ID 2R_DroMel_CAF1
Location 5,640,078 – 5,640,198
Length 120
Max. P 0.654769
window2524

overview

Window 4

Location 5,640,078 – 5,640,198
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.71
Mean single sequence MFE -31.66
Consensus MFE -22.74
Energy contribution -22.90
Covariance contribution 0.16
Combinations/Pair 1.04
Mean z-score -1.90
Structure conservation index 0.72
SVM decision value 0.25
SVM RNA-class probability 0.654769
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5640078 120 - 20766785
UCGCCAGCAAUCUCGCCUGAGCUCUACCAACCCCUCUUUCUCCCUGACCCGAGAGAGGGAGUGGGCAUAAACACCCAUCGAUUCAUGUUUAUUUGCCUAUGAGGACUCGAACUCAGACUC
......((......))(((((.((..((...(((((((((..........))))))))).(((((((((((((............))))))..)))))))..))....)).))))).... ( -34.10)
>DroSec_CAF1 6769 120 - 1
UCGCCAGCAAUCUCGCCUGUGCUCUACCAACCCCUCUUUCUCCAUGACCCGAGAGAGGGAGUGGGCAUAAACACCCAUCGAUUCAUGUUUAUUUGCCGAUAGGGACUCGAACUCAGACUC
..((((((......).))).))(((.(((..(((((((((..........)))))))))..))).........(((((((...((........)).)))).)))..........)))... ( -31.10)
>DroSim_CAF1 6839 120 - 1
UCGCCAGCAAUCUCGCCUGAGCUCUACCAACCCCUCUUUCUCCCUGACCCGAGAGAGGGAGUGGGCAUAAACACCCAUCGAUUCAUGUUUAUUUGCCGAUGAGGACUCGAACUCAGACUC
......((......))(((((.((..(((..(((((((((..........)))))))))..))).........(((((((...((........)).))))).))....)).))))).... ( -35.10)
>DroEre_CAF1 7194 107 - 1
UCGCCAGCAAUCUCGCCUCAGCUCUACCAACC-CUCUUUCUCCCUGACCCGAGAGAGGGAAUGGGCAUAAACACCCAUCGAUUCAUGUUUAUUUGCUUAUGAGAAC------------UC
..........((((................((-(((((((..........))))))))).(((((((((((((............))))))..)))))))))))..------------.. ( -26.30)
>DroYak_CAF1 6793 107 - 1
UCGCCAGCAAUCUCGCCUGAGCUCUACCAACC-CUCUUUCUCCCUGACCUGAGAGAGGGAAUGGGCAUAAAAACCCAUCGAUUCAUGUUUAUUUGCUUAUGAGAGC------------UC
......((......))..(((((((.....((-(((((((..........))))))))).(((((((...((((............))))...))))))).)))))------------)) ( -31.70)
>consensus
UCGCCAGCAAUCUCGCCUGAGCUCUACCAACCCCUCUUUCUCCCUGACCCGAGAGAGGGAGUGGGCAUAAACACCCAUCGAUUCAUGUUUAUUUGCCUAUGAGGACUCGAACUCAGACUC
......((((....((.((((.((.........(((((((((........))))))))).(((((........))))).)))))).))....))))........................ (-22.74 = -22.90 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:58 2006