| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,639,919 – 5,640,038 |
| Length | 119 |
| Max. P | 0.512663 |
| Location | 5,639,919 – 5,640,038 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.31 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -21.10 |
| Energy contribution | -20.26 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.512663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5639919 119 + 20766785 CUUCCUUUAUAUUUGGAUGUAUCUUUAUAUAUAACGCCGCUCGUUCUAGGUCUUCUUUGGCCAGCUCUUUAGACUGAG-CACUCUCCGUUUGUUUACACACAUCGAGCAUGCUUGAAGUU ((((...(((((..(((....)))..)))))....((.(((((.....((((......)))).((((........)))-).......((.((....)).))..)))))..))..)))).. ( -27.00) >DroSec_CAF1 6612 117 + 1 CUUCCUUUAUUUUUGGAUGUAUCUUUAA--AUAACGCCGCUCGUUCUUGGUCUUCUUUGGCCAGCUCUUCAGACUGAG-CGUUCUCCGUUUGUUUACACACAUCGAGCAUGCUUGAAGUU ((((..((((((..(((....)))..))--)))).((.(((((....(((((......)))))((((........)))-).......((.((....)).))..)))))..))..)))).. ( -27.90) >DroSim_CAF1 6682 117 + 1 CUUCCUUUAUUUUUGGAUGUAUCUUUAA--AUAACGCCGCUUGUUCUGGGUCUUCUUUGGCCAGCUCCUCAGACUGAG-CGUUCUCCGUUUGUUUACACACAUCAAGCAUGCUUGAAGUU ((((..((((((..(((....)))..))--)))).((.(((((...((((((......)))).......(((((.(((-....))).)))))......))...)))))..))..)))).. ( -25.60) >DroEre_CAF1 7037 118 + 1 CUUCCUUUACUUUUGGAUGUAUCUUUAA--AUAUCGCCGCACGUUCUGGGCCUUCUUUGGCCAGCUCUUCAGACUGAACCGUUUUCCGUUUGUUUACACGCAUCGAGCAUGCUCGAACUU ..(((.........)))...........--...(((..(((.((((..((((......)))).((....(((((.(((.....))).))))).......))...)))).))).))).... ( -25.50) >DroYak_CAF1 6635 118 + 1 CUUCCUUUAUUUUUGGAUGUAUCUUUAA--AUAACGCCGCUCGUUCUGGGUCUUCUUUGGCCAGCUCUUCAGACUGAGCCGUUUUCCGUUUGUUUACACACAUCGAGCACGCUCGCACUU .............((..((((....(((--((((((..(((((.((((((((......)))).......)))).)))))))))....)))))..))))..)).((((....))))..... ( -25.11) >consensus CUUCCUUUAUUUUUGGAUGUAUCUUUAA__AUAACGCCGCUCGUUCUGGGUCUUCUUUGGCCAGCUCUUCAGACUGAG_CGUUCUCCGUUUGUUUACACACAUCGAGCAUGCUUGAAGUU ..(((.........)))..................((.(((((.....((((......)))).......(((((.(((.....))).)))))...........)))))..))........ (-21.10 = -20.26 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:57 2006