Locus 1482

Sequence ID 2R_DroMel_CAF1
Location 5,638,941 – 5,639,061
Length 120
Max. P 0.809638
window2520

overview

Window 0

Location 5,638,941 – 5,639,061
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.53
Mean single sequence MFE -26.19
Consensus MFE -23.18
Energy contribution -23.74
Covariance contribution 0.56
Combinations/Pair 1.09
Mean z-score -1.41
Structure conservation index 0.89
SVM decision value 0.64
SVM RNA-class probability 0.809638
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5638941 120 + 20766785
AUCAAACAACAAACAACAAUAAGCUUGGACUAAUAGAGACCAGAACGCGAUUCUAACGCCGUUAACUCACGUACCGAAUGGCGCUUUCGUUUCUAUCCCAAAACUCCGGUCUGUUGGAUU
......(((((.((..........((((....((((((((.(((.(((.((((..(((...........)))...)))).))).))).)))))))).)))).......)).))))).... ( -25.73)
>DroSec_CAF1 5667 120 + 1
AUCAAACAACAAACAACAACAAGCUCGGACUAAUAGAGACCAGAACGCGAUUCCAACGCCGUUAACUCACGUACCGAAUGGCGCUUUCGUUUCUAUCCCAAAACUCCGGUCUGUUGGAUU
................(((((..(.((((...((((((((.(((.(((.((((..(((...........)))...)))).))).))).))))))))........)))))..))))).... ( -29.40)
>DroSim_CAF1 5749 120 + 1
AUCAAACAACCAACAACAACAAGCUCGGACUAAUAGAGACCAGAACGCGAUUCCAACGCCGUUAACUCACGUACCGAAUGGCGCUUUCGUUUCUAUCCCAAAACUCCGGUCUGUUGGAUU
................(((((..(.((((...((((((((.(((.(((.((((..(((...........)))...)))).))).))).))))))))........)))))..))))).... ( -29.40)
>DroEre_CAF1 6058 113 + 1
AUAUAA-------CAACAUUAAGAACGGACUAAGAGAGACCAAAACGCGAUUCCAACGCCGUUAAUUUACGUACCGAAUGGCGCUUUCGUUUCUAUCCCAAAACUCCGGUCUGUUGGAUU
......-------(((((....((.((((.....((((((.(((.(((.((((......(((......)))....)))).))).))).))))))..........)))).))))))).... ( -24.56)
>DroYak_CAF1 5616 113 + 1
AUCUAA-------CCACAUUAAGCACGGACUAAAAGAGACCAAAAAGCGAUUCCAACGCCGUUAACUCACGUACCGAAUGGCGCUUUCGUUUCUAUCCCAAAACUCCGGUCUGUUGGAUU
((((((-------(.......((..((((.....((((((...((((((....)...((((((.((....))....))))))))))).))))))..........))))..))))))))). ( -21.87)
>consensus
AUCAAACAAC_AACAACAAUAAGCUCGGACUAAUAGAGACCAGAACGCGAUUCCAACGCCGUUAACUCACGUACCGAAUGGCGCUUUCGUUUCUAUCCCAAAACUCCGGUCUGUUGGAUU
................(((((.((.((((...((((((((.(((.(((.((((..(((...........)))...)))).))).))).))))))))........)))))).))))).... (-23.18 = -23.74 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:54 2006