Locus 1481

Sequence ID 2R_DroMel_CAF1
Location 5,638,787 – 5,638,905
Length 118
Max. P 0.627107
window2519

overview

Window 9

Location 5,638,787 – 5,638,905
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.13
Mean single sequence MFE -25.56
Consensus MFE -23.58
Energy contribution -23.30
Covariance contribution -0.28
Combinations/Pair 1.09
Mean z-score -1.17
Structure conservation index 0.92
SVM decision value 0.19
SVM RNA-class probability 0.627107
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5638787 118 + 20766785
CUACUUCGAAU--AUUACUAUUACCAUCAAUCACUUUUGUUGCAUUUCGCAUUGCACCAAAAAACUUGAGCAAAAUUGCUGGCGAAAUUACUCCGGUCGGAAGUGGUGUUUCGUAAUACG
......((((.--..(((((((.((.((((....(((((.((((........)))).)))))...))))........(((((.(......).))))).)).))))))).))))....... ( -25.10)
>DroSec_CAF1 5513 118 + 1
CUACUUCGAAU--AUUACUAUUGCCAUCAAUCACUUUUGUUGCAUUUCGCAUUGCACCAAAAAACUUGAGCAAAAUUGCUGGCGAAAUAACUCCGGUCGGAAGUGGUGUUUCGUAAUACU
.(((...((((--((((((.((((((((((....(((((.((((........)))).)))))...))))(((....)))))))))......(((....))))))))))))).)))..... ( -28.70)
>DroSim_CAF1 5595 118 + 1
CUACUUCGAAU--AUUACUAUUACCAUCAAUCACUUUUGUUGCAUUUCGCAUUGCACCAAAAAACUUGAGCAAAAUUGCUGGCGAAAUUACUCCGGUCGGAAGUGGUGUUUCGUAAUACU
......((((.--..(((((((.((.((((....(((((.((((........)))).)))))...))))........(((((.(......).))))).)).))))))).))))....... ( -25.10)
>DroEre_CAF1 5901 120 + 1
CUACUUCGAAUAUAUUACUAUUACCAUCAAUCACUUUUGUUGCAUUUCGCAUUGCACCAAAAAACUUGAGCAAAAUUGCUGGCGAAAGUACUCCAGUCGGAAGUGGUGUUUCGUAAUACG
.((((((((......((((.(..(((((((....(((((.((((........)))).)))))...))))(((....))))))..).))))......)).))))))(((((....))))). ( -25.50)
>DroYak_CAF1 5461 117 + 1
CUACUUCGAAU--AUUACUAUUACCAUCAAUAACUUUUGUUGCAUUUCGCAUUGCACUAA-AAACUUGAGCAAAAUUGCUGGCGAAAUUACUCCGGUCGGAAGUAGUGUUUCGUAAUACG
......((((.--..(((((((.((.((((....(((((.((((........)))).)))-))..))))........(((((.(......).))))).)).))))))).))))....... ( -23.40)
>consensus
CUACUUCGAAU__AUUACUAUUACCAUCAAUCACUUUUGUUGCAUUUCGCAUUGCACCAAAAAACUUGAGCAAAAUUGCUGGCGAAAUUACUCCGGUCGGAAGUGGUGUUUCGUAAUACG
......((((.....(((((((.((.((((....(((((.((((........)))).)))))...))))........(((((.(......).))))).)).))))))).))))....... (-23.58 = -23.30 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:53 2006