Locus 1480

Sequence ID 2R_DroMel_CAF1
Location 5,637,856 – 5,637,975
Length 119
Max. P 0.578032
window2518

overview

Window 8

Location 5,637,856 – 5,637,975
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.41
Mean single sequence MFE -28.54
Consensus MFE -24.88
Energy contribution -25.08
Covariance contribution 0.20
Combinations/Pair 1.14
Mean z-score -1.26
Structure conservation index 0.87
SVM decision value 0.09
SVM RNA-class probability 0.578032
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5637856 119 - 20766785
UUCGCUGUUUGUUUGGUCACUGUCAGAUAUUCGACAUUCCAAUUGGGCACUUUUGGGGGUUCGCUUCCAAAAAAAAAUUGGAUUUGCAACGGUGAUUAUGUAACUUUAU-UUGUUAUACA
.(((((((((((((((......)))))))...(.((.(((((((......(((((((((....)))))))))...)))))))..)))))))))))...((((((.....-..)))))).. ( -31.20)
>DroSec_CAF1 4595 110 - 1
UUCGCUGUUUGUUUGGUCACUGUCAGAUAUUCGGCAUUCCAAUUGGGCACUUUUGGGGGUUCGCUUCCAAAAA---AU------UGCAACGGUGAUUAUGUAACUUUAU-UCGUAAUACA
...((((..(((((((......)))))))..))))...((....))(((.(((((((((....))))))))).---..------)))....(((.(((((.........-.)))))))). ( -27.10)
>DroSim_CAF1 4674 116 - 1
UUCGCUGUUUGUUUGGUCACUGUCAGAUAUUCGACAUUCCAAUUGGGCACUUGUGGGGGUUCGCUUCCAAAAA---AUUGGAUUUGCAACGGUGAUUAUGUAACUUUAU-UCGUAAUACA
......(((....((((((((((..((..(((.(((.(((....)))....))).)))..))((.(((((...---.)))))...)).))))))))))...))).....-.......... ( -25.40)
>DroEre_CAF1 4959 119 - 1
UUCGCUGUUUAUUUGGUCACUGUCAGAUAUUUGACAUUCCAAUUGGGCACUUUUGGGGGUUCUUUUCCAAAAA-AAAUUGGAUUUGCAACGGCGAUUAUGUAACUUUGUUUUGUUAUACA
.((((((((...........((((((....)))))).(((((((......((((((..(....)..)))))).-.))))))).....))))))))...((((((........)))))).. ( -31.70)
>DroYak_CAF1 4537 117 - 1
UUCGCUGUUUGUUUGGUCGCUGUCAGAUAUUCGACAUUCCAAUUGGGCACUUGUGGGGGUUCGUUUCCAAA-A-AAAUUGGAUUUAC-ACGGCGAUUAUGUAACUUUGUUUUGUUAUACA
.(((((((..(.((((....((((........))))..)))).)..))....(((..((((((........-.-....))))))..)-)))))))...((((((........)))))).. ( -27.32)
>consensus
UUCGCUGUUUGUUUGGUCACUGUCAGAUAUUCGACAUUCCAAUUGGGCACUUUUGGGGGUUCGCUUCCAAAAA_AAAUUGGAUUUGCAACGGUGAUUAUGUAACUUUAU_UUGUUAUACA
.(((((((..(.((((....((((........))))..)))).)..))..((((((..(....)..))))))..................)))))...((((((........)))))).. (-24.88 = -25.08 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:52 2006