| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 1,409,488 – 1,409,607 |
| Length | 119 |
| Max. P | 0.877258 |
| Location | 1,409,488 – 1,409,607 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.97 |
| Mean single sequence MFE | -22.57 |
| Consensus MFE | -19.93 |
| Energy contribution | -19.60 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1409488 119 - 20766785 UGCAAUUAUAUAUAUAUGUAGCCAGAUAAAUAAUAAUCUCAGGAGACACAAAGAAAUCUACAACGACAAGAUUUUGAUAUUGGCUUUAGAGCUACUCACCUACUGGUAUUAAUUCGGCA .((...(((((....)))))(((((..........(((...(....).....(((((((.........))))))))))..(((((....)))))........))))).........)). ( -19.20) >DroSec_CAF1 35214 105 - 1 -------------AUAUGCAGCCGGAUAAAUAAUA-UCCCAGGAGACACAAACAAAUCUACAAUGACAAGAUUUGGAUAUCGUCCUUAGAGUUACUCACCUACUGGUUUUAAUUCGGCA -------------.......((((((((.....))-))).((((((......(((((((.........)))))))....)).))))..((((((...(((....)))..))))))))). ( -25.10) >DroSim_CAF1 40225 105 - 1 -------------AUAUGCAGCCUGAUAAAUAAUA-UCCCAGGAGACACUAACAAAUCUACAAUGACAAGAUUUGGAUAUCCUCCUUAGAGUUACUCACCUACUGGUUUUAAUUCGGCA -------------.......(((............-....(((((.......(((((((.........)))))))......)))))..((((((...(((....)))..))))))))). ( -23.42) >consensus _____________AUAUGCAGCCAGAUAAAUAAUA_UCCCAGGAGACACAAACAAAUCUACAAUGACAAGAUUUGGAUAUCGUCCUUAGAGUUACUCACCUACUGGUUUUAAUUCGGCA ....................(((.((((.............(....).....(((((((.........)))))))..)))).......((((((...(((....)))..))))))))). (-19.93 = -19.60 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:08 2006