Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,636,274 – 5,636,387 |
Length | 113 |
Max. P | 0.930320 |
Location | 5,636,274 – 5,636,387 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 90.81 |
Mean single sequence MFE | -31.76 |
Consensus MFE | -28.46 |
Energy contribution | -28.46 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.90 |
SVM decision value | 1.20 |
SVM RNA-class probability | 0.930320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5636274 113 + 20766785 ACUAAGCGCGUAAC------AAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCUUUUCGCCUUUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCCU .....((((.....------..((((((..((((.((........)).))))...))))))....(((((..(((((((...((........)).)))).)))..)))))))))..... ( -32.20) >DroSec_CAF1 2994 113 + 1 ACUAAGCGCGUAAC------AAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCUUUUCGCCUUUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCCU .....((((.....------..((((((..((((.((........)).))))...))))))....(((((..(((((((...((........)).)))).)))..)))))))))..... ( -32.20) >DroSim_CAF1 3075 113 + 1 ACUAAGCGCGUAAC------AAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCUUUUCGCCUUUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCCU .....((((.....------..((((((..((((.((........)).))))...))))))....(((((..(((((((...((........)).)))).)))..)))))))))..... ( -32.20) >DroEre_CAF1 3375 111 + 1 AAUAAGCGCGUAACAAGAACAAGCGAGACCCCGAAAUCUUUUUUCAUCUCGUUCU--------UUGCGUCUUUGAGUGUGCGUGCCAAAAGUCAAAUACGUCAUCGACGCGCGCAUCAU .....((((.....((((....((((((....((((.....)))).)))))))))--------).(((((..(((((((...((.(....).)).)))).)))..)))))))))..... ( -30.90) >DroYak_CAF1 2974 111 + 1 ACUAAGCGCGUAACAAGAACAAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCU--------UUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCGU .....((((((............(((((....((((.....)))).)))))(((.--------.(((((.(((((((............))))))).))).))..)))))))))..... ( -31.30) >consensus ACUAAGCGCGUAAC______AAGCGAGACCCCGAAAUCUUUUUUCAUCUCGGUCUUUUCGCCUUUGCGUCUUUGAGUGUGCGUGCCAAAAUUCAAAUACGUCAUCGACGCGCGCAGCCU .....((((..............(((((....((((.....)))).)))))..............(((((..(((((((...((........)).)))).)))..)))))))))..... (-28.46 = -28.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:50 2006