Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,635,841 – 5,635,945 |
Length | 104 |
Max. P | 0.654209 |
Location | 5,635,841 – 5,635,945 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.05 |
Mean single sequence MFE | -34.01 |
Consensus MFE | -26.20 |
Energy contribution | -26.84 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.12 |
Mean z-score | -1.66 |
Structure conservation index | 0.77 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654209 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5635841 104 - 20766785 GUGCACGUGUGU----GUGUGCGUGCGUCUUUGUGGAAUGCAAGUGAAACAAAGGCAAGGCUAAUUUUCCGUGGCACGCACUAUCCAGACCAACUUAU------------CUAUCUACAU ......((.((.----.(((((((((((((((((...((....))...))))))))..((........))...)))))))).)..)).))........------------.......... ( -29.20) >DroSec_CAF1 2536 104 - 1 GUGCACGUGUGU----GUGUGCGUGCGUCUUUGUGGAAUGCAAGUGAAACAAAGGCAAGGCUAAUUUGCCGUGGCACGCACUAUCCAGGCCAACUUAU------------CUAUUCACAU ......((.((.----.(((((((((((((((((...((....))...))))))))..(((......)))...)))))))).)..)).))........------------.......... ( -34.60) >DroSim_CAF1 2617 104 - 1 GUGCACGUGUGU----GUGUGCGUGCGUCUUUGUGGAAUGCAAGUGAAACAAAGGCAAGGCUAAUUUGCCGUGGCACGCACUAUCCAGGCCAACUUAU------------CUAUUCACAU ......((.((.----.(((((((((((((((((...((....))...))))))))..(((......)))...)))))))).)..)).))........------------.......... ( -34.60) >DroEre_CAF1 2888 118 - 1 GUGUAUGUGUGU--GUGUCUGCGUGCGCCUUUGUGAAAUGCAAGUAAAACAAAGGCAGGGCCAAUUUACCGUGGCACGCACUUUGCAGAGCAACCUACAUAUGUACAUACAUAUUCACUU (((((((((..(--((((.(((((((((((((((..............)))))))).((.........))...)))))))..((((...))))...)))))..)))))))))........ ( -43.94) >DroYak_CAF1 2513 108 - 1 GUGUACGUGUGUACGGGUAUGUGUGGGUCUUUGUGGAAUGCACGUAAAACAAAGGCAAGGCUAAUUUGCCGUGGCACGCACUCUUCAGGCCAACUUAU------------CUAUUCACUU ........(((...(((((.((...(((((....(((.(((..(.....)....((..(((......)))...))..))).)))..))))).)).)))------------))...))).. ( -27.70) >consensus GUGCACGUGUGU____GUGUGCGUGCGUCUUUGUGGAAUGCAAGUGAAACAAAGGCAAGGCUAAUUUGCCGUGGCACGCACUAUCCAGGCCAACUUAU____________CUAUUCACAU ......((.((.......((((((((((((((((...((....))...))))))))..(((......)))...))))))))....)).)).............................. (-26.20 = -26.84 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:48 2006