Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,635,275 – 5,635,395 |
Length | 120 |
Max. P | 0.922624 |
Location | 5,635,275 – 5,635,395 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.17 |
Mean single sequence MFE | -26.66 |
Consensus MFE | -22.96 |
Energy contribution | -23.44 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.65 |
Structure conservation index | 0.86 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.922624 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5635275 120 + 20766785 GCCUUCAAUUGAAGAACUGUAAAAGGAAGCACUACAACAAAGAAUUAUGAUAAAACCGUUCAAUUCCCAAAAAUUUGGCGAGUCGGCACAUGGCUUUGUCAAUUAAGGCCUUUCUUAGCA ((((((....))))........(((((((..((.(......).....(((((((.((((((.((((((((....)))).)))).))...)))).)))))))....))..))))))).)). ( -24.70) >DroSec_CAF1 1904 120 + 1 GCCUUCAAUUGAAGAACUGUAAAAGGAAGCACUACAACAAAGAAUUAUAAUAAAGCCGUUCAAUUCCCAAAAAUUUGGCGAGUCGGCACAUGGCUUUGUCAAUUAAGGCCUUGCUUAGCA ((((((....))))............(((((.......................((((....((((((((....)))).))))))))....(((((((.....))))))).))))).)). ( -29.00) >DroSim_CAF1 1985 120 + 1 GCCUUCAAUUGAAGAACUGUAAAAGGAAGCACUACAACAAAGAAUUAUAAUAAAGCCGUUCAAUUCCCAAAAAUUUGGCGAGUCGGCACAUGGCUUUGUCAAUUAAGGCCUUGCUUAGCA ((((((....))))............(((((.......................((((....((((((((....)))).))))))))....(((((((.....))))))).))))).)). ( -29.00) >DroEre_CAF1 2324 120 + 1 GCCUUCAAUUGAACAACUGUAAAAGGAAGCACUACAACAGAGAAUAAUAAUAAAGCCGUUCAAUUCCCAAAAAUUUGGCGAUUCGGCACAUGGCUUUGUCAAUUAAGGCCUUUCUUAGCA (((((.((((((....((((...((......))...))))..........(((((((((((((((.((((....)))).)))).))...))))))))))))))))))))........... ( -28.60) >DroYak_CAF1 1955 118 + 1 GCCUUCAAUUGAAGAACUGUAAAAGAAAGCACUACAACAGAGAAUAAUAAUAAAGCCGUUCAAUUUCCA--AAUUUGGCGAGUCGGCACAUGGCUUUGUCAAUUAAGAUCUUUCUUAGCA ((((((....))))........(((((((..((.....))....((((.((((((((((((.(((((((--....))).)))).))...))))))))))..))))....))))))).)). ( -22.00) >consensus GCCUUCAAUUGAAGAACUGUAAAAGGAAGCACUACAACAAAGAAUUAUAAUAAAGCCGUUCAAUUCCCAAAAAUUUGGCGAGUCGGCACAUGGCUUUGUCAAUUAAGGCCUUUCUUAGCA (((((.((((((.....(((...((......))...)))...........(((((((((((.((((((((....)))).)))).))...))))))))))))))))))))........... (-22.96 = -23.44 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:47 2006