Locus 1473

Sequence ID 2R_DroMel_CAF1
Location 5,623,039 – 5,623,131
Length 92
Max. P 0.563081
window2508

overview

Window 8

Location 5,623,039 – 5,623,131
Length 92
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.92
Mean single sequence MFE -28.07
Consensus MFE -17.13
Energy contribution -16.63
Covariance contribution -0.50
Combinations/Pair 1.17
Mean z-score -1.68
Structure conservation index 0.61
SVM decision value 0.06
SVM RNA-class probability 0.563081
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5623039 92 - 20766785
AACUAUGCGAGCAGCGCCGCUGGAGCUGGGU----------UAUAUCCAA-GUGGGCUAUAAAUACUACUAC-----------UGCUCCUUGCCGUGGCUUUUCAGUUACUAGC------
((((..((.....))(((((.((((((((((----------...)))))(-((((..........)))))..-----------.))))).....))))).....))))......------ ( -25.90)
>DroSec_CAF1 12718 92 - 1
AACUAUGCGAGCUGCGCCGCUGGAGCUGGGU----------UAUAUCCAA-GUGGGCUAUAAAUACUACUAC-----------UGCUCCUUGCCGUGGCUUUUCAGUUACUAGC------
((((....((((..((..((.((((((((((----------...)))))(-((((..........)))))..-----------.)))))..))))..))))...))))......------ ( -28.40)
>DroSim_CAF1 19252 92 - 1
AACUAUGCGAGUUGCGCCGCUGGAGCUGGGU----------UAUAUCCAA-GUGGGCUAUAAAUACUACUAC-----------UGCUCCUUGCCGUGGCUUUUCAGUUACUAGC------
((((....((((..((..((.((((((((((----------...)))))(-((((..........)))))..-----------.)))))..))))..))))...))))......------ ( -27.00)
>DroEre_CAF1 12554 92 - 1
AGCUAUGCGAGUCGCGCAGCUGGAGCUGGGU----------UAUAUCCAA-GUGGGCUAUAAAUACUACUAC-----------UGCUCCUUGCCGUGGCUUUUCAGUUACUAGC------
.((((.((((((((((..((.((((((((((----------...)))))(-((((..........)))))..-----------.)))))..))))))))))....))...))))------ ( -29.20)
>DroYak_CAF1 12359 92 - 1
UACUAUGCUAGCCGAGCAGCUGGAGCUGGGU----------UAUAUCCAA-GUGGGCUAUAAAUACUACUAC-----------UGCUCCGUGCCGUGGCUUUUCAGUUACUAGC------
......(((((.((.(((..(((((((((((----------...)))))(-((((..........)))))..-----------.)))))))))))(((((....))))))))))------ ( -26.00)
>DroAna_CAF1 13556 119 - 1
UAAUUUAAUAACCGAGCAACUGGAACUGGUUAAAUGUAAUUAAUAUCCAAAACUGGCUAUUAAUACU-CUACUUGUUCCUUUCCGCUCUGUUCCGUGGCUUUUCAGUUACUAGCCACUCU
.........(((.((((....(((((.(((.....(((.((((((.(((....))).))))))))).-..))).))))).....)))).)))..((((((...........))))))... ( -31.90)
>consensus
AACUAUGCGAGCCGCGCAGCUGGAGCUGGGU__________UAUAUCCAA_GUGGGCUAUAAAUACUACUAC___________UGCUCCUUGCCGUGGCUUUUCAGUUACUAGC______
......(((.....))).(((((((((((............((((.((......)).)))).......................((..(.....)..))...)))))).)))))...... (-17.13 = -16.63 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:42 2006