Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,622,610 – 5,622,703 |
Length | 93 |
Max. P | 0.996614 |
Location | 5,622,610 – 5,622,703 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 93.38 |
Mean single sequence MFE | -21.72 |
Consensus MFE | -18.20 |
Energy contribution | -18.56 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.51 |
Structure conservation index | 0.84 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5622610 93 + 20766785 AUCGCACCCACACACAACCGAUGACUGCUCCCGAAUUUCCCCAUUCCCAGCG-GUGAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA (((((...........................((((......))))...(((-(((((((((......))))))))).)))...)))))..... ( -20.10) >DroSec_CAF1 12288 94 + 1 AUCGCACCCACACACAACCGAUGACCGCUCCCGAAUUUCCCCAUUCCUCGCGAGUAAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA (((((...........................((((......))))...(((((((((((((......)))))))))))))...)))))..... ( -25.10) >DroSim_CAF1 18822 94 + 1 AUCGCACCCACACACUACCGAUGACCGCUCCCGAAUUUCCCCAUUCCUCGCGAGUAAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA (((((...........................((((......))))...(((((((((((((......)))))))))))))...)))))..... ( -25.10) >DroEre_CAF1 12125 92 + 1 AUCGCACCCACCCACAACCGAUGACAGCUCCCGAACUUC-CCAUUCCCAGCG-GUGAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAAACA (((((..............((((..((........))..-.))))....(((-(((((((((......))))))))).)))...)))))..... ( -18.90) >DroYak_CAF1 11931 93 + 1 ACGGCACCCACCCACAACCGAUGACAGCUCCCGAAUUUCCCCAUUCCCAGCG-GUGAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA ..(((.....................(((...((((......))))..)))(-(((((((((......)))))))))).)))............ ( -19.40) >consensus AUCGCACCCACACACAACCGAUGACAGCUCCCGAAUUUCCCCAUUCCCAGCG_GUGAAAGCUCGCGAAAGCUUUUACUCGCCCAGUGAUAACCA (((((...........................((((......))))...(((.(((((((((......))))))))).)))...)))))..... (-18.20 = -18.56 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:40 2006