Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,614,370 – 5,614,519 |
Length | 149 |
Max. P | 0.876949 |
Location | 5,614,370 – 5,614,488 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 87.37 |
Mean single sequence MFE | -25.10 |
Consensus MFE | -16.99 |
Energy contribution | -17.83 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.11 |
Mean z-score | -1.87 |
Structure conservation index | 0.68 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539076 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5614370 118 - 20766785 UCCAAAAUGUUUGAAACCCCAUACAAAUGUUCUUUACUGAAGCUAACAACUAGUUUCAAAGACCCAGUAACAUUGGCAGAAGCAAUUAUAAAUGCUGAUUUCUGCGCAGUUGCCUAAA .......(((.((......)).))).....((((...((((((((.....))))))))))))....(((((..(((((((((((........))))....))))).)))))))..... ( -23.40) >DroSec_CAF1 3952 117 - 1 UCCAAACUGUUUGAAAAC-CAUACAAAUGUUGUUUGCUGAAGCUAACAACUAGUUUCAGAGACCCAGUAACAUUUGCAGAAGCAAUUAUAAAUGCCGAGUUCUGCGCAGUUGUCUGAA ....((((((........-.....(((((((((((.(((((((((.....))))))))))))).....)))))))(((((((((........)))....))))))))))))....... ( -30.00) >DroSim_CAF1 3976 118 - 1 UCCAAACUGUUUGAAAACCCAUACAAAUGUUGUACGCUGAAGCUAACAACUAGUUUCAGAGACCCAGUAACAUUUGCAGAAGCAAUUAUAAAUGCUGAGUUCUGCGCAGUUGUCUAAA ....((((((..............(((((((((...(((((((((.....)))))))))..)).....)))))))(((((((((........))))....)))))))))))....... ( -29.40) >DroEre_CAF1 4154 118 - 1 UCAAAAUUGUUUCAAAACCUAUACAAAUGUUCUUCUCUGCAGCUUACAACUAGUUUUAGAUACCCAGUAACAUUUGCAGAAGCAAUUAUAAAUACUGAGUUCUGCGCAGUUGUCUAAA ....(((((((((..........((((((((((..((((.((((.......)))).)))).....)).))))))))..)))))))))......((((.(.....).))))........ ( -18.80) >DroYak_CAF1 3954 111 - 1 UAAAAAUUGUUUGAAAACCCAUAGAAAUGGUCUUUGCUAAAGCUAAAAACUAGUUUUAGAGACCCAGUAACAUUUGCACAAGCAAUUAU-------GAGUUCUGCGCAGUUGUCUAAA ....((((((.....(((.(((((....(((((...(((((((((.....)))))))))))))).........((((....))))))))-------).)))....))))))....... ( -23.90) >consensus UCCAAACUGUUUGAAAACCCAUACAAAUGUUCUUUGCUGAAGCUAACAACUAGUUUCAGAGACCCAGUAACAUUUGCAGAAGCAAUUAUAAAUGCUGAGUUCUGCGCAGUUGUCUAAA ....((((((..............(((((((.....(((((((((.....))))))))).........)))))))((((((..................))))))))))))....... (-16.99 = -17.83 + 0.84)
Location | 5,614,408 – 5,614,519 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.28 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -12.71 |
Energy contribution | -13.91 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.17 |
Mean z-score | -2.43 |
Structure conservation index | 0.53 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876949 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5614408 111 - 20766785 CUACAUUGAAAUGGUUAGGUGAAAA-AU--------AGUCUCCAAAAUGUUUGAAACCCCAUACAAAUGUUCUUUACUGAAGCUAACAACUAGUUUCAAAGACCCAGUAACAUUGGCAGA ..(((((...((((...(((...((-((--------(..........)))))...)))))))...)))))((((...((((((((.....)))))))))))).(((((...))))).... ( -20.30) >DroSec_CAF1 3990 110 - 1 CUACAUUCAAAUGGUUAUGUGAAAA-AU--------AAUCUCCAAACUGUUUGAAAAC-CAUACAAAUGUUGUUUGCUGAAGCUAACAACUAGUUUCAGAGACCCAGUAACAUUUGCAGA .....(((((((((((.((.((...-..--------....)))))))))))))))...-....((((((((((((.(((((((((.....))))))))))))).....)))))))).... ( -27.50) >DroSim_CAF1 4014 111 - 1 CUACAUUCAAAUGGUUAUGUGAAAA-AU--------AAUCUCCAAACUGUUUGAAAACCCAUACAAAUGUUGUACGCUGAAGCUAACAACUAGUUUCAGAGACCCAGUAACAUUUGCAGA .....(((((((((((.((.((...-..--------....)))))))))))))))........((((((((((...(((((((((.....)))))))))..)).....)))))))).... ( -26.20) >DroEre_CAF1 4192 119 - 1 UUACUUUUAAAUGUUUAAAUGAACAGAU-AAAAGCUUCUCUCAAAAUUGUUUCAAAACCUAUACAAAUGUUCUUCUCUGCAGCUUACAACUAGUUUUAGAUACCCAGUAACAUUUGCAGA ...((((((..(((((....)))))..)-))))).............................((((((((((..((((.((((.......)))).)))).....)).)))))))).... ( -17.50) >DroYak_CAF1 3985 120 - 1 UUACAUUUAAAUGAUUAGAUGGAGAGAUGAAAAGCUUCUCUAAAAAUUGUUUGAAAACCCAUAGAAAUGGUCUUUGCUAAAGCUAAAAACUAGUUUUAGAGACCCAGUAACAUUUGCACA ((((.((((((..(((...(((((((.(....)..)))))))..)))..)))))).............(((((...(((((((((.....))))))))))))))..)))).......... ( -27.60) >consensus CUACAUUCAAAUGGUUAGGUGAAAA_AU________AAUCUCCAAACUGUUUGAAAACCCAUACAAAUGUUCUUUGCUGAAGCUAACAACUAGUUUCAGAGACCCAGUAACAUUUGCAGA .....(((((((((((....((................))....)))))))))))........((((((((.....(((((((((.....))))))))).........)))))))).... (-12.71 = -13.91 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:37 2006