Locus 147

Sequence ID 2R_DroMel_CAF1
Location 1,407,688 – 1,407,805
Length 117
Max. P 0.696992
window332

overview

Window 2

Location 1,407,688 – 1,407,805
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.75
Mean single sequence MFE -29.80
Consensus MFE -22.70
Energy contribution -23.30
Covariance contribution 0.60
Combinations/Pair 1.07
Mean z-score -1.77
Structure conservation index 0.76
SVM decision value 0.34
SVM RNA-class probability 0.696992
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1407688 117 + 20766785
AUAAU---ACACCAUAAUGACAAAAUUACUAUAUUUAGUAUGCUAAAAAUCGGUCAAAGUGUCAGUGGGUUGUCCGCAGUCGCCUUCAUUAGCGGCACACGGCAACGACUGACGAUUUUU
.....---...((((..(((((.....(((((.(((((....))))).)).))).....)))))))))((((((....(((((........)))))...((....))...)))))).... ( -28.80)
>DroSec_CAF1 33481 116 + 1
AUAAU---ACACCAUAAUGACCAAAUUACUAUAUUUAGUAUGCUAAAAAUCGGUCAAAGUGUCAGUGGGUUGUCCGCAGCCGCCUUCAUUAGCGGCGCAGAGCAGCGAGUGACGGUU-UU
.....---..(((....(((((....(((((....)))))(......)...)))))....((((.(.(.(((..(((.(((((........))))))).)..)))).).))))))).-.. ( -31.80)
>DroSim_CAF1 38496 116 + 1
AUAAU---ACACCAUAAUGACAAAAUUACUAUAUUUAGUAUGCUAAAAAUCGGUCAAAGUGUCAGUGGGUUGUCCGCAGCCGCCUUCAUUAGCGGCGCAGAGCAGCGAGUGACGGUU-UU
....(---((.((((..(((((.....(((((.(((((....))))).)).))).....)))))))))((((..(((.(((((........))))))).)..))))..)))......-.. ( -32.00)
>DroEre_CAF1 31940 118 + 1
AUAAUCGUGCACCAUAAUGACAAAAUUACUAUAUUUAGUAUGCUAAAAAUCGGUCAAAGUGUCAGUGGGUUGUCCACAACCGCCUUCAUUAACGGCACACAGCAGCGAAUGACGG-U-UU
....((((((.......(((((.....(((((.(((((....))))).)).))).....)))))((((((((....)))))(((.........))).))).))).))).......-.-.. ( -29.50)
>DroYak_CAF1 33897 116 + 1
AUAAU---AUACCAUAAUGACAAAAUUACUAUAUUUAGUAUGCUAAAAAUCGGUCAAAGUGUCAGUGGGUUUUCCACAACCGCCUUCAUUAGCGGCACACAGCAACAAAUGACGGCU-UU
.....---.........(((((.....(((((.(((((....))))).)).))).....)))))((((.....))))....(((.(((((.(..((.....))..).))))).))).-.. ( -26.90)
>consensus
AUAAU___ACACCAUAAUGACAAAAUUACUAUAUUUAGUAUGCUAAAAAUCGGUCAAAGUGUCAGUGGGUUGUCCGCAGCCGCCUUCAUUAGCGGCACACAGCAGCGAAUGACGGUU_UU
...........((((..(((((.....(((((.(((((....))))).)).))).....)))))))))(((((.....(((((........))))).....))))).............. (-22.70 = -23.30 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:07 2006