Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,609,508 – 5,609,622 |
Length | 114 |
Max. P | 0.578847 |
Location | 5,609,508 – 5,609,622 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 78.62 |
Mean single sequence MFE | -43.67 |
Consensus MFE | -22.58 |
Energy contribution | -23.62 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.30 |
Mean z-score | -1.90 |
Structure conservation index | 0.52 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.578847 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5609508 114 - 20766785 GUUGGUGUAGGUGAAGGUGCCUCCGCUGAUGCCAUUGUUCACCGCUGUCAUGGCUGCCGCAGUUGUGUUAUUGGCGGCGGAAUUAGCGGCGGAAUUGGCGGACGGAAAUGCCUG ((..(((.((((......)))).)))..))((((...(((.((((((......((((((((((......))).)))))))...)))))).)))..))))((.((....)))).. ( -45.10) >DroSec_CAF1 7918 102 - 1 GUUGGCGUAGGUGAAGGUGCCUCCGCUGAUGCCAUUGCUUACCGCCGUCAUGGCUGCCGCAGUUGUGUUAUUGGCGGCG------------GAAUUGGCGGACGGAAAUGCCUG ..((((((.((((.((....)).)))).))))))..((((.(((((((((...((((((((((......))).))))))------------)...)))))).))).)).))... ( -44.70) >DroSim_CAF1 5937 114 - 1 GUUGGCGUAGGUGAAGGUGCCUCCGCUGAUGCCAUUGUUUACCGCCGUCAUGGCUGCCGCAGUUGUGUUAUUGGCGGCGGAAUUAGCGGCGGAAUUGGCGGACGGAAAUGCCUG ..((((((.((((.((....)).)))).))))))..((((.(((((((((...(((((((((((.((((......)))).)))).)))))))...)))))).)))))))..... ( -49.80) >DroEre_CAF1 7321 102 - 1 GUUGGCGUAGGUAAAGGUUCCUCCGCUGAUGCCAUUGCUCACCGCAGUCAUGGCUGUCGCAGUUGUGUUAUUGGGGGCA------------GAGUUGGCGGCCGAAAAUGCCUG ((..(((.(((........))).)))..))((((((((((.(((....((..((((...))))..))....))))))))------------)...))))(((.......))).. ( -37.70) >DroYak_CAF1 7314 99 - 1 G---CCGUAGGUAAAGGUUCCUCCGCUGAUGCCAUUGUUCACCGCCGUCAUGGCUGUCCCAGUUGUGUUAUUGGCGGUG------------GAGUUGACAGCCGGAAAGGCCUG (---((...)))..(((((..(((((((....((...((((((((((.((..((((...))))..))....))))))))------------))..)).))).))))..))))). ( -38.60) >DroAna_CAF1 7999 105 - 1 GUUGGCAUAGGUAAAGCUUCCGCCGUUGAUUCCAUUGGUGACGGCCGUCAUCGUGGUGGCGGCUGGGU---UGGCGGCAGAA------ACUGGAUUUCCAGCAGAAAAUGCCUG ...(((((.........(((.(((((..((((....(....)(((((((((....)))))))))))))---..))))).)))------.((((....))))......))))).. ( -46.10) >consensus GUUGGCGUAGGUAAAGGUGCCUCCGCUGAUGCCAUUGUUCACCGCCGUCAUGGCUGCCGCAGUUGUGUUAUUGGCGGCG____________GAAUUGGCGGACGGAAAUGCCUG ...(((((.((........))(((((((((((....))...((((((.((..((((...))))..))....))))))................))))))))).....))))).. (-22.58 = -23.62 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:35 2006