Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,607,309 – 5,607,399 |
Length | 90 |
Max. P | 0.847822 |
Location | 5,607,309 – 5,607,399 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.68 |
Mean single sequence MFE | -24.65 |
Consensus MFE | -17.08 |
Energy contribution | -18.37 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.27 |
Mean z-score | -1.61 |
Structure conservation index | 0.69 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847822 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5607309 90 - 20766785 ACUGAAUCCAAAUUGUAUGUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGUAAACUCUAGUUGG-C---UGCUGCCGCCUC--GCGAGGCGGUCAG .(((((.......((((((((....))))))))....))------------)))((..((((......))))...)-)---..(((((((((.--...)))))).))) ( -25.30) >DroPse_CAF1 3696 104 - 1 ----AAGUCGAUGUGAUUAUACAUACAUAUACAAUAUUUUUGCAAUUAGCAUAGGUUACUAUGGUACUCUAGGUUGCCCUCUGCCACCGCCUAUGGAGUGGUAGACAG ----..((..(((((........)))))..)).........(((((((.(((((....))))).))......)))))..((((((((..((...)).))))))))... ( -22.90) >DroSec_CAF1 4872 90 - 1 ACUGAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGAAAACUCUAGUUGG-C---UGCUGCCGCCUC--GCAGGGCGGUCAG .(((((.......((((((((....))))))))....))------------)))((..(((((....)))))...)-)---..(((((((((.--...)))))).))) ( -25.50) >DroSim_CAF1 3716 90 - 1 ACUGAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGUAAACUCUAGUUGG-C---UGCUGCCGCCUC--GCGAGGCGGUCAG .(((((.......((((((((....))))))))....))------------)))((..((((......))))...)-)---..(((((((((.--...)))))).))) ( -25.30) >DroEre_CAF1 5139 90 - 1 ACUAAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGUAAACUCUAGUUGG-C---UGCUGCCGCCUU--GCGAGGCGGACAC ......(((....((((((((....))))))))((((..------------.((((..((((......))))..((-(---....))))))).--..)))).)))... ( -23.70) >DroYak_CAF1 5135 90 - 1 ACUAAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU------------UAGGUAUCUGGUAAACUCUAGUUGG-C---UGCUGCCGCCUC--GCGAGGCGGACAG .(((((.......((((((((....))))))))....))------------)))((..((((......))))...)-)---..(((((((((.--...)))))).))) ( -25.20) >consensus ACUGAAUCCAAAUUGUAUAUAUAUCUAUAUGCAUCUCUU____________UAGGUAUCUGGUAAACUCUAGUUGG_C___UGCUGCCGCCUC__GCGAGGCGGACAG .......((((..((((((((....)))))))).........................((((......)))))))).......((((((((((....))))))).))) (-17.08 = -18.37 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:34 2006