Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,596,488 – 5,596,587 |
Length | 99 |
Max. P | 0.506065 |
Location | 5,596,488 – 5,596,587 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 81.31 |
Mean single sequence MFE | -25.01 |
Consensus MFE | -11.78 |
Energy contribution | -12.62 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.05 |
Mean z-score | -2.08 |
Structure conservation index | 0.47 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506065 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5596488 99 + 20766785 ACAAGAAAAUGUUGAGGUGGCAU-UUUCAUGCUAAGCUUGAUUGAUCAAAUAAUCAAUUAGUUGUACCUGGUGUUUUCUAGUGUAUACUCCUUGACAACA--------------- .........(((..(((((((((-....))))))((((.(((((((......)))))))))))((((((((......)))).))))...)))..)))...--------------- ( -26.30) >DroSec_CAF1 5456 98 + 1 ACAAGAAAACGUUGAGGUGGCAA-UUUUAUGCUAAGCUUGAUUGCUCAAAUAAUCAAUUAUUUGUGCCUGGUGU-GCCUAGUGUACUUACCUUGACAACA--------------- ..........((..(((((((((-((....((...))..))))))..................((((((((...-..)))).)))).)))))..))....--------------- ( -24.00) >DroSim_CAF1 5533 99 + 1 ACAAGAAAACGUUGAGGUGGCAU-UUCUAUGCUAAGCUUGAUUGCUCAAAUAAUCAAUUAGUUGUGCCUGGUGUUGCCUAGUGUACUUACCUUGACAACA--------------- ..........((..(((((((((-....))))).((((((((((......))))))...))))((((((((......)))).))))..))))..))....--------------- ( -25.30) >DroEre_CAF1 5700 115 + 1 ACAAGAAAAUAUUGAGGUGUCCUUUUUCCUGAUAAGCUUGAUUGCUCAAAUAAUCAAUUAGUCAUACCUUGUGUUGCCUAGUGAAUGUUCCUUGAAAACAAGGAACAUUAACCAG ...((..(((((.((((((..........((((.((.(((((((......))))))))).)))))))))))))))..)).((.(((((((((((....))))))))))).))... ( -26.90) >DroYak_CAF1 5616 99 + 1 ACAAGAAAAUAUUGAGGUGGCAU-UUUCACGAUAAGCUUGAUUGCUCAAAUAAUCAAUUAGUUAUACCUUGUGUUGCCUAGUAAACUUUUCUUGAAAACA--------------- .((((((((((((.(((..((((-.............(((((((......))))))).............))))..)))))))...))))))))......--------------- ( -22.57) >consensus ACAAGAAAAUGUUGAGGUGGCAU_UUUCAUGCUAAGCUUGAUUGCUCAAAUAAUCAAUUAGUUGUACCUGGUGUUGCCUAGUGUACUUUCCUUGACAACA_______________ .((((.........(((((((((..............(((((((......))))))).............)))))))))...........))))..................... (-11.78 = -12.62 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:31 2006