Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,591,279 – 5,591,373 |
Length | 94 |
Max. P | 0.973691 |
Location | 5,591,279 – 5,591,373 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.16 |
Mean single sequence MFE | -21.73 |
Consensus MFE | -21.63 |
Energy contribution | -22.30 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.41 |
Structure conservation index | 1.00 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.973691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5591279 94 + 20766785 UUUGAGCGUCGUACAAUCUCUUCAGUCGCAUUUUAUGUUUUUAAUGUUUUUUAGCACACUAAAAUCGUCAAAUGUGCUGAAUAGAUUUAGUUAA ..............(((((.(((((.(((((((.(((.(((((.(((........))).))))).))).)))))))))))).)))))....... ( -21.90) >DroSec_CAF1 443 94 + 1 UUUGAGCGUCGUACAAUCUCUUCAGUCGCAUUUUAUGUUUUUAAUGUUAUUUAGCACACGAAAAUCGUAAAAUGUGCUCAAUAGAUUUAGUUAA .(((((((.....).............((((((((((.((((..(((........)))..)))).))))))))))))))))............. ( -18.60) >DroSim_CAF1 425 94 + 1 UUUGAGCGUCGUACAAUCUCUUCAGUCGCAUUUUAUGUUUUUAAUGUUAUUUAGCACACGAAAAUCGUAAAAUGUGCUGAAUAGAUUUAGUUAA ..............(((((.(((((.(((((((((((.((((..(((........)))..)))).)))))))))))))))).)))))....... ( -24.70) >consensus UUUGAGCGUCGUACAAUCUCUUCAGUCGCAUUUUAUGUUUUUAAUGUUAUUUAGCACACGAAAAUCGUAAAAUGUGCUGAAUAGAUUUAGUUAA ..............(((((.(((((.(((((((((((.((((..(((........)))..)))).)))))))))))))))).)))))....... (-21.63 = -22.30 + 0.67)
Location | 5,591,279 – 5,591,373 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 97.16 |
Mean single sequence MFE | -19.60 |
Consensus MFE | -17.40 |
Energy contribution | -18.07 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.68 |
Structure conservation index | 0.89 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5591279 94 - 20766785 UUAACUAAAUCUAUUCAGCACAUUUGACGAUUUUAGUGUGCUAAAAAACAUUAAAAACAUAAAAUGCGACUGAAGAGAUUGUACGACGCUCAAA .......(((((.((((((.(((((...(.(((((((((........))))))))).)...))))).).))))).))))).............. ( -21.20) >DroSec_CAF1 443 94 - 1 UUAACUAAAUCUAUUGAGCACAUUUUACGAUUUUCGUGUGCUAAAUAACAUUAAAAACAUAAAAUGCGACUGAAGAGAUUGUACGACGCUCAAA .............((((((.(((((((.(.((((.((((........)))).)))).).)))))))((((..........)).))..)))))). ( -17.30) >DroSim_CAF1 425 94 - 1 UUAACUAAAUCUAUUCAGCACAUUUUACGAUUUUCGUGUGCUAAAUAACAUUAAAAACAUAAAAUGCGACUGAAGAGAUUGUACGACGCUCAAA .......(((((.((((((.(((((((.(.((((.((((........)))).)))).).))))))).).))))).))))).............. ( -20.30) >consensus UUAACUAAAUCUAUUCAGCACAUUUUACGAUUUUCGUGUGCUAAAUAACAUUAAAAACAUAAAAUGCGACUGAAGAGAUUGUACGACGCUCAAA .......(((((.((((((.(((((((.(.((((.((((........)))).)))).).))))))).).))))).))))).............. (-17.40 = -18.07 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:30 2006