Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,590,849 – 5,590,939 |
Length | 90 |
Max. P | 0.551713 |
Location | 5,590,849 – 5,590,939 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 78.03 |
Mean single sequence MFE | -36.87 |
Consensus MFE | -24.45 |
Energy contribution | -23.43 |
Covariance contribution | -1.02 |
Combinations/Pair | 1.46 |
Mean z-score | -1.18 |
Structure conservation index | 0.66 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551713 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5590849 90 - 20766785 GGAUCAGCUGGCGGGUGCGUCGCUGGGCGGUCGCCGUGCUGGUCGCUUUGGCCGGAAAACCAUCAUCGUUGGCACUCGUUGGCGUUAUAA ......((..((((((((..((.(((..(((..(((.((..(.....)..)))))...))).))).))...))))))))..))....... ( -38.10) >DroPse_CAF1 26 87 - 1 GGAUGAGCUGUCGCGUCUUACGCUGGGCUUUUGCGGCGCUCGAUUGCUUGUCCGGGAAGCCGCC---GCCGGCACUCGUUGGUGUUAUAA (((..(((.((((((.....))).((((.........))))))).)))..)))((....))..(---((((((....)))))))...... ( -33.80) >DroEre_CAF1 26 90 - 1 GGAUCAGCUGGCGGGUGCGUCGCUGGGCGGUCGCCGUGCUGGUCGGUUUGGCCGGAAAACCAUCAUCGUUGGCACUCGUUGGCGUUAUGA .(((((((((((((.(((........))).)))))).)))))))(((((.......))))).(((((((..((....))..)))..)))) ( -39.20) >DroYak_CAF1 26 90 - 1 GGAUCAGCUGGCGGGUGCGUCGCUGGGCGGUCGCCGUGCUGGUCGCUUUGGCCGGAAAACCAUCAUCGUUGGCACUCGUUGGCGUUAUAA ......((..((((((((..((.(((..(((..(((.((..(.....)..)))))...))).))).))...))))))))..))....... ( -38.10) >DroAna_CAF1 26 87 - 1 GGAUGAGCUGGCGGGUACGUCGCUGGGCGGUCGCCGUAAUGGCCGGCUUGGCCGGAAAGUCAUCCACG---GUGCUCGUUGGCGUAAUGA ......((..((((((((...((..((((((((......))))).)))..)).(((......)))...---))))))))..))....... ( -38.20) >DroPer_CAF1 361 87 - 1 GGAUGAGCUGUCGCGUCUUACGCUGGGCUUUUGCGGCGCUCGAUUGCUUGUCCGGGAAGCCGCC---GCCGGCACUCGUUGGUGUUAUAA (((..(((.((((((.....))).((((.........))))))).)))..)))((....))..(---((((((....)))))))...... ( -33.80) >consensus GGAUCAGCUGGCGGGUGCGUCGCUGGGCGGUCGCCGUGCUGGUCGGCUUGGCCGGAAAACCAUCAUCGUUGGCACUCGUUGGCGUUAUAA ......((((((((((((...((((((((.....))).((((((.....))))))....))).....))..))))))))))))....... (-24.45 = -23.43 + -1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:28 2006