Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,590,004 – 5,590,121 |
Length | 117 |
Max. P | 0.712615 |
Location | 5,590,004 – 5,590,121 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.47 |
Mean single sequence MFE | -42.53 |
Consensus MFE | -29.56 |
Energy contribution | -30.50 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 0.70 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5590004 117 + 20766785 ACAAAGUAAACAGCGCAGGCGCCCUUAAGUAUGCCGCGCAUCCUCGCCACGUGAGCGAGGGAGACGGUGCCAAU-CCGUUGUCCCUCUUG--CUCGCCUGCCUGCUCGAACGUGAGAAAU ............((((.((((..(....)..))))))))...(((((....((((((((((((((((.......-))))).))))))..(--(......))..)))))...))))).... ( -44.60) >DroSec_CAF1 10819 117 + 1 ACAAAGUAAACAGCGCAGGCGCCCUUAAGUAUACCGCGCAUCCUCGCCACGUGAGCGAGGGAGAUGGUGCCAAC-ACAUUGUACCUCUUG--CUCGCCUGCCUGCUCGAACGUGAGAAAU ..........(((.((((((...............(((......))).....(((((((((..(..(((.....-.)))..)..))))))--))))))))))))((((....)))).... ( -39.10) >DroSim_CAF1 8240 117 + 1 ACAAAGUAAACAGCGCAGGCGCCCUUAAGUAUACCGCGCAUCCUCGCCACGUGAGCGAGGGAGAUGGUGCCAAC-ACAUUGUACCUCUUG--CUCGCUUGCCUGCUCGAACGUGAGAAAU ............(.((((((...............(((......)))...(((((((((((..(..(((.....-.)))..)..))))))--)))))..)))))).)...(....).... ( -39.10) >DroEre_CAF1 8557 120 + 1 ACAAAGUAAACAGCGCAGGCGCCCUUAAGUAUACCGCUCAUCCUCGCCACGCGUGCGAGGAAGACGGGGCCAACUUCGUUGUCCCUCUCCCUCUCGCACGCGUACCCGUUGCUGAGAAAU ..........((((((.((((......(((.....)))......))))((((((((((((..((.((((.((((...)))).)))).))..))))))))))))....).)))))...... ( -47.30) >consensus ACAAAGUAAACAGCGCAGGCGCCCUUAAGUAUACCGCGCAUCCUCGCCACGUGAGCGAGGGAGACGGUGCCAAC_ACAUUGUACCUCUUG__CUCGCCUGCCUGCUCGAACGUGAGAAAU ..........(((.(((((((...................((((((((....).)))))))(((.(((((..........))))))))......))))))))))((((....)))).... (-29.56 = -30.50 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:27 2006