Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,581,813 – 5,581,923 |
Length | 110 |
Max. P | 0.829214 |
Location | 5,581,813 – 5,581,923 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 82.34 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -24.02 |
Energy contribution | -24.83 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.14 |
Mean z-score | -1.98 |
Structure conservation index | 0.80 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5581813 110 + 20766785 UCUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUUGAUCAUCCGUAAGAAGCUCUCAAAACU-GCGU--CCCUUACUGGUUUAUUAAUA ....(((((...(((((.....(((((.....)))))))))).))))).(((((....)))))..(((((((..((.(........-).))--..))))).)).......... ( -30.90) >DroSec_CAF1 81 110 + 1 UUUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCUCAAAACU-UCGU--CUCUUACCGGUUUACUAAUA .....((((((((((((....((((((.....)))))).))..((((((.....))))))...........))))))).)))....-....--.................... ( -31.80) >DroSim_CAF1 81 110 + 1 UUUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCUCAAAACU-UCCU--CCCUUACCGGCUUAUUAAUA .....((((((((((((....((((((.....)))))).))..((((((.....))))))...........))))))).)))....-....--.................... ( -31.80) >DroEre_CAF1 81 113 + 1 UUUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCAUACGACUCAUGCCACUCUUAGCGGUUAAUUAUUA ........(((((((((....((((((.....)))))).))..((((((.....))))))...........)))))))...........(((.(.....).)))......... ( -32.70) >DroYak_CAF1 81 110 + 1 UUUACUUGGGUCUGCGCUAUUUCUGGCCCCACGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCAUAACACU-GUGC--CUCCUACCGGUUAAUUAUUU ........(((((((((....((((((.....)))))).))..((((((.....))))))...........))))))).((((.(.-(((.--....))).)))))....... ( -32.60) >DroMoj_CAF1 81 101 + 1 UUUAUUUGGGUCUGCGCUACUUCUGGCCCCACGCCCGAUGCAAUCAGGAGGUGAUUCUUGAUCAUCCGUAAGCACU----GAAUCU-UCCA--AUCA-----UUUUAUCUAUA ...(((..((..((((........(((.....))).((((..((((((((....))))))))))))))))..).).----.)))..-....--....-----........... ( -20.80) >consensus UUUACUUGGGUCUGCGCUAUUUCUGGCCCCAUGCCAGGUGCAACCAGGAGAUCAUCCUGGAUCAUCCGUAAGUAGAUCUCAAAACU_UCGU__CUCUUACCGGUUUAUUAAUA (((((((((((.(((((.....(((((.....))))))))))))).(((((((......)))).))).))))))))..................................... (-24.02 = -24.83 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:26 2006