Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,579,420 – 5,579,540 |
Length | 120 |
Max. P | 0.634543 |
Location | 5,579,420 – 5,579,540 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.94 |
Mean single sequence MFE | -43.93 |
Consensus MFE | -15.11 |
Energy contribution | -16.48 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.27 |
Mean z-score | -2.32 |
Structure conservation index | 0.34 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5579420 120 + 20766785 ACAGCGGGCAGAUCGGCAAAGCCAGGCCAAAUGGACUCCGAUGGAGCUCCCAAGAGAUCGAUGAUCAUGUCCAGCUGUGCUAUCUCCGAAUUACCCGGCAGCAAAGGUUUUCCGAGCAGC (((((((((((((((((........)))....(((((((...)))).)))............)))).))))).)))))(((..(((.(((..(((..........))).))).))).))) ( -38.00) >DroVir_CAF1 620 120 + 1 ACAGCUGGCAAGUCCAGGAAACCCGGCCAAAUUGAUUCGGAGGGUGCACCAAGCAGAUCAAUAAUCAUGUCAAGCUGUGCAAUCUCCGAAUUGCCUGGGAGCAGCGGUUUGCCCAGCAAU ...(((((((((.((..(...((((((......(((((((((..(((((..(((.(((..........)))..))))))))..)))))))))))).)))..)...)))))).)))))... ( -45.50) >DroGri_CAF1 683 120 + 1 AGGGCGGGCAAUUCGAGGUAGCCGGGCCAAAUGGAUUCUGAGGGGGCGCCAAACAGAUCGAUAAUCAUGUCGAGCUGCGCAAUCUCAGAAUUGCCCGGCAGCAGCGGUUUGCCCGUCAAC ..(((((((((..((..((.(((((((......((((((((((..((((.....((.((((((....)))))).))))))..))))))))))))))))).))..))..)))))))))... ( -65.80) >DroWil_CAF1 384 120 + 1 AAAGCUGGCAGUUCUGUAAAUCCUGGCCAAAUGGAUUUUGAGGGCGCUCCCAGCAAUUCAAUUAUCAAGUCUAGUUGAGCAAUCUCAGAGUUGCCCGGCAGCAAAGGUUUACCGAUCAAC ...((((.(...((...((((((.........)))))).))((((((((..((...((((((((.......))))))))....))..))).)))))).))))...((....))....... ( -32.60) >DroMoj_CAF1 405 120 + 1 ACGGCAGGCAAAUCUUUAUAGCCGGGCCAAAUCGAUUCCGAUGGAGCGCCAAGCAGGUCAAUAAUCAUGUCCAGCUGUGCAAUUUCCGAGGUGCCCGGCAGUAGCGGCUUUCCUAAUAAC ..((.((((......((((.((((((((...(((..(((...)))((((..(((.((.((.......)).)).)))))))......))).).))))))).))))..)))).))....... ( -38.40) >DroAna_CAF1 370 120 + 1 ACGGCGGGCAGCUCCGAAAAGCCAGGCCAAAUGGUUUCCGAGGGAGCACCCAGCAAGUCAAUUAUCAUGUCCAGCUGGGCAAUCUCUGAGUUACCCGGCAGCAAGGGUUUCCCAAGCAGA ..(.((((.(((((((..((((((.......)))))).))(((((...((((((..(.((.......)).)..))))))...)))))))))).)))).).((..(((...)))..))... ( -43.30) >consensus ACAGCGGGCAAAUCCGGAAAGCCAGGCCAAAUGGAUUCCGAGGGAGCACCAAGCAGAUCAAUAAUCAUGUCCAGCUGUGCAAUCUCCGAAUUGCCCGGCAGCAACGGUUUGCCCAGCAAC ...((.(((...........)))..(((.....(((((.((((..((((..(((...................)))))))..)))).)))))....))).))...((....))....... (-15.11 = -16.48 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:25 2006