Locus 1460

Sequence ID 2R_DroMel_CAF1
Location 5,578,177 – 5,578,297
Length 120
Max. P 0.600195
window2491

overview

Window 1

Location 5,578,177 – 5,578,297
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.94
Mean single sequence MFE -36.09
Consensus MFE -26.42
Energy contribution -27.32
Covariance contribution 0.90
Combinations/Pair 1.38
Mean z-score -1.17
Structure conservation index 0.73
SVM decision value 0.13
SVM RNA-class probability 0.600195
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5578177 120 - 20766785
GUGGAUUGCUUACGCCCUGGUGGUCCACGUACUGCUUCUAGGCUCAAUUUUCGUGAUCUACUUUCGUUCGCCGGUGAUCACGGGCCUUACUCCACAGAAGCAUCUUUUAUAUUACGGCUU
((((((..((........))..))))))....((((((((((((.......(((((((.(((..(....)..)))))))))))))))........))))))).................. ( -37.31)
>DroSec_CAF1 16467 120 - 1
GUGGAUUGCUUACGCCCUGGUGAUCCACGUACUGCUUCUAGGCUCAAUUUUCGUGAUCUACUUCCGCUCGCCGGUAAUCACGGGCCUUACUCCGCAGAAGCAUCUUGAAUAUUACGGCUU
((((((..((........))..))))))....(((((((.((.......((((((((.((((..(....)..)))))))))))).......))..))))))).................. ( -34.94)
>DroEre_CAF1 15066 120 - 1
GUGGAUUUCUUACGCCCUAGUGGUCCACGUACUGCUUCUGGGCUCGAUUUUCGUGAUUUACUUCCGGUCGCCGGUGAUCACGGGCCUAACUCCGCAGAAGCAACUUUUACAUUACGGCCU
((((((..((........))..))))))....((((((((((.......(((((((((.....((((...)))).))))))))).......)).)))))))).................. ( -38.54)
>DroWil_CAF1 19646 120 - 1
GUGGAUCAUUUACGCCCUGCUGGUGCAUAUUUUGCUCCUGGGAUCCAUUUUCGUUAUCUACUUUCGAUCACCCGUCAUCAAGGGACUGGAACCGCAGCAGCCCCUGUCCUCGUUUGGCUU
(((((...)))))(((..((.((..((......(((.(((((.((((...(((...........)))...(((........)))..)))).)).))).)))...))..)).))..))).. ( -28.90)
>DroYak_CAF1 15307 120 - 1
GUGGAUUGCUUACGCCCUGGUGGUCCACGUACUGCUUUUGGGCUCCAUUUUCGUGAUCUACUUCCGAUCGCCGGUGAUCACGGGCCUUACUCCGCAGAAGCGACUUUUACACUACGGCUU
((((((..((........))..))))))....((((((((((.......(((((((((.....(((.....))).))))))))).......)).)))))))).................. ( -39.34)
>DroAna_CAF1 18341 120 - 1
GUGGAUUGUGUACGCUUUAGUGGUACACGUACUACUCCUGGGCUCCAUAUUUGUGAUUUACUUUCGCUCGCCGGUGAUCACAGACCUGAAGCCGCAGAAGGAACUCCUGUCGUACGGAUU
.......((((((((....)).))))))((((.((..(((((((.((..(((((((((.(((..(....)..))))))))))))..)).)))).))).(((....))))).))))..... ( -37.50)
>consensus
GUGGAUUGCUUACGCCCUGGUGGUCCACGUACUGCUUCUGGGCUCCAUUUUCGUGAUCUACUUCCGAUCGCCGGUGAUCACGGGCCUUACUCCGCAGAAGCAACUUUUAUAUUACGGCUU
((((((((((........))))))))))....((((((((((.......(((((((((.....(((.....))).))))))))).......)).)))))))).................. (-26.42 = -27.32 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:24 2006