Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,407,350 – 1,407,462 |
Length | 112 |
Max. P | 0.607730 |
Location | 1,407,350 – 1,407,462 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.34 |
Mean single sequence MFE | -40.94 |
Consensus MFE | -21.38 |
Energy contribution | -24.42 |
Covariance contribution | 3.04 |
Combinations/Pair | 1.09 |
Mean z-score | -2.18 |
Structure conservation index | 0.52 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607730 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1407350 112 - 20766785 UGACCCAUUUUUGCCGGGCUGCUCUCUUUUCUCUCCGUUUCUUUUGUGAGAA------GACUCGAACGAAUUCUAUGUACCAG--UGGGGAGGGGGGAAGGGGGAGGCGGCAGAAACUGG ....((((((((((((.....(((((((((((((((......(((((..((.------...))..)))))((((((......)--))))).))))))))))))))).))))))))).))) ( -42.20) >DroSec_CAF1 33135 119 - 1 UGACCCAUUUUCGCCGGGCUGCUCUCUUUUCUCUCCGUUUCUUUUGUGAGAAGACGAAGACUCGAACGAAUUCUAUGUACCACAAGG-GGCGGGGGGAAGGGGGAGGCGGCAGAAACUGG ....(((.((((.....(((((((((((((((((((((..((..((((.(...(((.(((.((....))..))).))).))))))).-.)))))))))))))))).))))).)))).))) ( -49.80) >DroSim_CAF1 38153 116 - 1 UGACCCAUUUUCGCCG-GCUGCUCUCUUUUCUCUCCGUUUCUUUUGUGAGAAGACGAAGACUCGAACGAAUUCUAUGUACCACAAGGGGGCGGGGGGAAGAGGGAG---GCAGAAACUGG ....(((.((((....-((..(((((((((((((((((..((((.(((.(...(((.(((.((....))..))).))).))))))))..)))))))))))))))))---)).)))).))) ( -46.90) >DroEre_CAF1 31618 105 - 1 UGACCCAUUUUCGCCUCGCUGCUCUCUUUUCUCUCCAUUUCUUUUGUG--------AAGACUGGAACGAAUUCUAUGUACC-G------ACGAGGGGCAGAGAGUGGCGGGAAAAACUGG ....(((.(((..((.(((..(((((((..(((((((..(((((...)--------)))).))))...........((...-.------)))))..).))))))..)))))..))).))) ( -35.90) >DroYak_CAF1 33569 106 - 1 UGACCCAUUUUCGCUGGGCUGCUCUCUUUUCUCUCCAUUUCUUUUGUG--------AAGACACGAACGAAUUCUAUGUACCAG------AAAAGGGGAAGACAGAGGCGGGAAAAACUGG ...((((.......))))((((.((((.(..(((((..(((.((((((--------....)))))).)))((((.......))------))..)))))..).)))))))).......... ( -29.90) >consensus UGACCCAUUUUCGCCGGGCUGCUCUCUUUUCUCUCCGUUUCUUUUGUGAGAA____AAGACUCGAACGAAUUCUAUGUACCAG___G_GGCGGGGGGAAGAGGGAGGCGGCAGAAACUGG ....(((.((((.....(((((((((((((((((((.((((......))))............(((....)))..................))))))))))))))).)))).)))).))) (-21.38 = -24.42 + 3.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:06 2006