Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,575,049 – 5,575,162 |
Length | 113 |
Max. P | 0.853522 |
Location | 5,575,049 – 5,575,162 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 91.91 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -17.12 |
Energy contribution | -19.12 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.35 |
Structure conservation index | 0.78 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5575049 113 + 20766785 CCACACGAAUACACAUCCUACACAACACCAUCCACAAUUGGGUGGGUCGAUUUUUUGGAGUAAUCCCAAAAAGAUACACUUGAUACAUUUUU--UU-UUAAGAAAUAUAAUUUCUG ..............(((..........(((((((....)))))))((...(((((.(((....))).)))))...))....)))........--..-...((((((...)))))). ( -18.80) >DroSec_CAF1 13347 116 + 1 CCACACGAAUACACAUCCUACACAACACCAUCCACAAUUGGGUGGGUCGAUUUUUUGGAGUAAUCCUAAAAAUAUACACUUGAUACAUUUUUUUUUUUUAAGAAAUAUAAUUUCUG ......(((.....(((..........(((((((....)))))))((..((((((.(((....))).))))))..))....)))..(((((((......))))))).....))).. ( -20.20) >DroSim_CAF1 13525 114 + 1 CCACACGAAUACACAUCCUACACAACACCAUCCACAAUUGGGUGGGUCGAUUUUUUGGAGUAAUCCUAAAAAUAUACACUGGAUACAUUUUU--UUUUAAAGAAAUAUAAUUUCUG ..............((((.........(((((((....)))))))((..((((((.(((....))).))))))..))...))))........--......((((((...)))))). ( -23.50) >DroEre_CAF1 11945 114 + 1 CCACACGAAAGCACAUCCUACACAACACCAUCCACAAUUGGGUGGGUCGAUUUUUUGGAGUAAUCCUCAAAAUAAACACUUGCUUAGCUUU--UUUUUAAAGAAAUAUAAUUUCUA ......((((((...............(((((((....)))))))((..(((((..(((....)))..)))))..)).........)))))--)......((((((...)))))). ( -25.50) >consensus CCACACGAAUACACAUCCUACACAACACCAUCCACAAUUGGGUGGGUCGAUUUUUUGGAGUAAUCCUAAAAAUAUACACUUGAUACAUUUUU__UUUUAAAGAAAUAUAAUUUCUG ...........................(((((((....)))))))((..((((((.(((....))).))))))..)).......................((((((...)))))). (-17.12 = -19.12 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:23 2006