Locus 1458

Sequence ID 2R_DroMel_CAF1
Location 5,574,604 – 5,574,698
Length 94
Max. P 0.765951
window2489

overview

Window 9

Location 5,574,604 – 5,574,698
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 79.44
Mean single sequence MFE -30.17
Consensus MFE -19.42
Energy contribution -19.70
Covariance contribution 0.28
Combinations/Pair 1.23
Mean z-score -1.69
Structure conservation index 0.64
SVM decision value 0.52
SVM RNA-class probability 0.765951
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5574604 94 + 20766785
GGGAUCGUCGAGAGUGGAAGAACUUUCGCGAUCUGGUUACCAGUGCCAGGUGAGCCAUCACACCACAUCCCAUUCUU-AAUGGC-C----UAUGAACUCU
(((((((.(((((((......))))))))))))((((((((.......))))).))).....)).(((.((((....-.)))).-.----.)))...... ( -28.30)
>DroSec_CAF1 12904 94 + 1
GGGAUCGUCGAGAGUGGAAGAACUUUCGCGAUCUGGUUACCAGUGCAAGGUGAGCCAUCAAACCAAAGGCCAUCCUU-AAUGGC-A----UAUAAAAUCU
(((((((.(((((((......))))))))))))((((((((.......))))).))).....))....(((((....-.)))))-.----.......... ( -31.90)
>DroSim_CAF1 13082 94 + 1
GGGAUCGUCGAGAGUGGAAGAACUUUCGCGAUCUGGUUACCAGUGCAAGGUGAGCCAUCAAAACGAAGCCCAUCCUU-AAUGGC-G----UUUUAAAUCU
.((((((.(((((((......)))))))))))))(((((((.......))))).))........(((((((((....-.)))).-)----))))...... ( -30.80)
>DroEre_CAF1 11502 94 + 1
GGGAUCGCCGAGAGUGGAAGAACUUUCGCGAUCUGGUUACCAGCGCCAGGUGAGCCACCACACCACAGCCCAUCCUU-AUUGGC-C----UCUGAACUCU
((((((((.((((((......))))))))))))((((((((.......))))).)))))....((.((.(((.....-..))).-)----).))...... ( -29.70)
>DroYak_CAF1 11738 95 + 1
GGGAUCGGCGAGAGUGGAAGAACUUUCGCGAUCUGGUCACGAGUGCCAGGUGAGUCACUACACCACAGCUCAUCCUU-AUUGCCUC----UAUGACCGCU
.((((((.(((((((......)))))))))))))(((((.(((.((.((((((((............))))).))).-...)))))----..)))))... ( -35.80)
>DroAna_CAF1 14902 97 + 1
GGGAACGUCGAGAGUGGAAAGUCUUUCGAGAUUUGGUCACUAGUGCCAGGUGAG--AUCAGGAAUCAGAUAACCCUCGAAUAGC-UUGAUUCUAAUGUCA
..((.(((..(((((...((((..((((((...(((.((....)))))(((...--(((........))).)))))))))..))-)).))))).))))). ( -24.50)
>consensus
GGGAUCGUCGAGAGUGGAAGAACUUUCGCGAUCUGGUUACCAGUGCCAGGUGAGCCAUCACACCACAGCCCAUCCUU_AAUGGC_C____UAUGAACUCU
(((((((.(((((((......))))))))))))((((((((.......))))).)))................))......................... (-19.42 = -19.70 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:22 2006